| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-04-11 | Added tissue correlation p value to correlation page results, since it was ↵ | zsloan | |
| missing before Removed a bunch of unused coded from all correlation-related files and the ctl analysis code | |||
| 2018-04-10 | Most code in webqtlUtil.py has been removed. There is so little left that ↵ | zsloan | |
| the remaining could should be migrated to the files that use them at some point. Some of this code was in the correlation code but not being used, so it wss removed from there as well. | |||
| 2018-04-09 | Removed svg.py, which I know isn't used, and webqtlFormData, which I'm ↵ | zsloan | |
| pretty sure also isn't used any more. Also removed some other unused code from the files listed | |||
| 2018-04-09 | Fixed issue that caused and error for certain types of mapping due to ↵ | zsloan | |
| variable not being initialized Removed a bunch of unused statistical functions from Plot.py and webqtlUtil.py. I figure that if we ever need them again, there's probably some third party library that includes them. Also removed unused file AJAX_table.py and other unused code from several other files | |||
| 2018-04-09 | Removed unused code from get_select_dataset.py and get_group_samplelists.py ↵ | zsloan | |
| scripts | |||
| 2018-04-09 | Removed unused code from convert_geno_to_bimbam.py and corestats.py | zsloan | |
| 2018-04-09 | Removed the basicStatistics directory/contents because nothing there was ↵ | zsloan | |
| being used except corestats, which I moved to utility Removed box plot code from Plot.py since we no longer use it either | |||
| 2018-04-09 | Removed unused code from webqtlFormData.py | zsloan | |
| 2018-04-09 | Removed some unused code in webqtlConfig; some might need to be added back ↵ | zsloan | |
| in later when other third party links are implemented on the trait/collection pages | |||
| 2018-04-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-04-06 | Mapping figure output now gives more accurate information | zsloan | |
| Committing partway through removing a bunch of unused code/files just in case something necessary gets removed | |||
| 2018-04-06 | Removing use ValidationPlugin. See ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/310 | |||
| 2018-04-06 | See #308. | Pjotr Prins | |
| Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. | |||
| 2018-04-05 | Removed cytoscape - it is in Guix | Pjotr Prins | |
| 2018-04-04 | Changed bar chart y axis range to avoid situation where all variation is ↵ | zsloan | |
| clustered at the top or bottom | |||
| 2018-04-04 | Merge pull request #303 from pjotrp/testing | zsloan | |
| Minor edits and document on ES | |||
| 2018-04-04 | Authentication: comments added | Pjotr Prins | |
| 2018-04-04 | ES: doc | Pjotr Prins | |
| 2018-04-04 | Switched to plotly probability plot | zsloan | |
| Removed a variety of scripts that weren't being used on the trait page | |||
| 2018-04-02 | Fixed link for staging server | zsloan | |
| 2018-04-02 | Fixed error that caused server to not start with new user code | zsloan | |
| 2018-04-02 | Merge pull request #301 from pjotrp/testing-rm-bloat | zsloan | |
| Testing rm bloat (jqplot and ckeditor) | |||
| 2018-04-02 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan | |
| 2018-04-02 | Just added link to staging branch to header bar | zsloan | |
| 2018-04-02 | Config files are store in https://github.com/genenetwork/gn-deploy-servers repo | Pjotr Prins | |
| 2018-04-02 | Remove file | Pjotr Prins | |
| 2018-04-02 | User manager no longer uses SQL | Pjotr Prins | |
| 2018-04-02 | js: rm ckeditor - need to replace | Pjotr Prins | |
| 2018-04-02 | js: removed jqplot | Pjotr Prins | |
| 2018-04-02 | user_session add output | Pjotr Prins | |
| 2018-03-30 | Collections: use logging instead of print (@zsloan) | Pjotr Prins | |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins | |
| 2018-03-30 | Fixes related to E-mail forgotten password | Pjotr Prins | |
| 2018-03-30 | Fixes forgotten password error, see #257 | Pjotr Prins | |
| 2018-03-29 | Can now add markers to collection from mapping results page | zsloan | |
| 2018-03-29 | Resolved conflict in views.py | zsloan | |
| 2018-03-29 | Fixed box plots and got them to update with changed sample data | zsloan | |
| Removed fast correlation option because it doesn't work well with gunicorn Changed the type of logger from error to debug when logging which page is being visited in views.py | |||
| 2018-03-29 | Fixed gsearch blowout https://github.com/genenetwork/genenetwork2/issues/295 | Pjotr Prins | |
| 2018-03-29 | Type checking in its own file | Pjotr Prins | |
| 2018-03-29 | Search: improved regex and some debug info | Pjotr Prins | |
| 2018-03-29 | Disable caching of search errors | Pjotr Prins | |
| 2018-03-29 | Checking search error terms with regex | Pjotr Prins | |
| 2018-03-29 | Illegal search term corrected treatment and no longer shows as error in logs | Pjotr Prins | |
| 2018-03-26 | Remove flask_security module - not used | Pjotr Prins | |
| 2018-03-26 | Use logger.info instead of logger.debug, fixes ↵ | Pjotr Prins | |
| https://github.com/genenetwork/genenetwork2/issues/296 | |||
| 2018-03-26 | Skip automatic use of EXPLAIN_TEMPLATE_LOADING. | Pjotr Prins | |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins | |
| 2018-03-26 | Fix | Pjotr Prins | |
| 2018-03-26 | Authentication: some mods around defaults | Pjotr Prins | |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see ↵ | Pjotr Prins | |
| https://github.com/pjotrp/genenetwork2/commit/63a5c8a42ad02e9126bb207465ff5eca98f6515d - Renamed WQFLASK_SETTINGS to GN2_SETTINGS | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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