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2015-03-13
runlmm.py: remove extraneous conversion
Pjotr Prins
2015-03-13
& Refactoring
Pjotr Prins
2015-03-13
& runlmm.py: added assertions for default run
Pjotr Prins
2015-03-12
lmm: use deep-copy to avoid side-effects
Pjotr Prins
2015-03-12
weird fix for lmm result - Python weirdness
Pjotr Prins
2015-03-12
Check G
Pjotr Prins
2015-03-12
Debug info
Pjotr Prins
2015-03-12
process_plink.py: remove unused file
Pjotr Prins
2015-03-12
Combined searches now work for most terms
Zachary Sloan
2015-03-12
Just committing changes to search so I can pull to production branch
Zachary Sloan
2015-03-11
runlmm.py: message
Pjotr Prins
2015-03-11
Adding multi-core kinship.py
Pjotr Prins
2015-03-11
lmm.py: change message on running from CLI
Pjotr Prins
2015-03-11
& Added testing option, now the results match
Pjotr Prins
2015-03-10
Normalisation
Pjotr Prins
2015-03-10
lmm.py: debugging output
Pjotr Prins
2015-03-10
Missing genotypes and normalize
Pjotr Prins
2015-03-10
Populationg Redis from TSV data
Pjotr Prins
2015-03-10
Refactored tsvreader out
Pjotr Prins
2015-03-10
Factoring out tsvreaders
Pjotr Prins
2015-03-10
convertlmm.py: add SNP names
Pjotr Prins
2015-03-10
Turn HAB encoding into pylmm genotyping
Pjotr Prins
2015-03-09
Add HAB encoding
Pjotr Prins
2015-03-09
Write genotype file non-transposed
Pjotr Prins
2015-03-09
Write genotype file (start)
Pjotr Prins
2015-03-09
Write genotype file (start)
Pjotr Prins
2015-03-09
plink: missing values in bim
Pjotr Prins
2015-03-09
Now we can use print in lamdba
Pjotr Prins
2015-03-09
Not using numpy - is part of the caller
Pjotr Prins
2015-03-09
plink: no need to know the number of SNPs, but you need INDs
Pjotr Prins
2015-03-09
plink support
Pjotr Prins
2015-03-09
convertlmm.py: options.geno
Pjotr Prins
2015-03-09
convertlmm.py: plink support
Pjotr Prins
2015-03-09
Parse new phenotype format
Pjotr Prins
2015-03-09
Parse new phenotype format
Pjotr Prins
2015-03-07
Write phenotypes
Pjotr Prins
2015-03-07
Kinship converter
Pjotr Prins
2015-03-05
Kinship file format support (reader and writer)
Pjotr Prins
2015-03-05
Convert textual kinship file
Pjotr Prins
2015-03-05
Helpers to split out functionality
Pjotr Prins
2015-03-05
Removed execution flag x from files
Pjotr Prins
2015-03-03
fix print
Pjotr Prins
2015-03-01
Warning
Pjotr Prins
2015-03-01
Add warning to running lmm.py from the command line
Pjotr Prins
2015-02-28
Started adaptations for introducing multi-core version
Pjotr Prins
2015-02-20
Splitting out handlers
Pjotr Prins
2015-02-20
Moved pylmm scripts that are not used by GN2
Pjotr Prins
2015-02-20
Remove empty dir
Pjotr Prins
2015-02-20
Split out behaviour for calling lmm from GN2 or (testing) CLI
Pjotr Prins
2015-02-11
Added pop-up for empty searches
Zachary Sloan
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