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2021-10-12Fixed filename in test_gen_covariates_file; I think that the hash changed ↵zsloan
because I changed the test dataset name from 'dataser_1' to 'dataset_1'
2021-10-12Fix R/qtl mapping testzsloan
2021-10-12Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵zsloan
feature/add_rqtl_pairscan
2021-10-12Fixed test_gen_covariates_filezsloan
2021-10-12Fixed export_mapping_results test in test_run_mapping.pyzsloan
2021-10-08Fixed some issues with scale and score_type in mapping export + include ↵zsloan
mapping method in export filename
2021-10-08Fix issue where outliers weren't being highlighted for rows drawn by ↵zsloan
Scroller (so all rows beyond a certain point)
2021-10-06tests: test_run_mapping: Add missing "name" attribute to testsBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing callsBonfaceKilz
After adding the missing attribute to "self.trait", we need to also need to update some missing calls.
2021-10-06tests: test_run_mapping: Fix failing assert when getting perm strataBonfaceKilz
2021-10-06tests: test_run_mapping: Add missing attribute to "self.trait"BonfaceKilz
2021-10-06tests: test_run_mapping: Add missing positional argument "vals_hash"BonfaceKilz
2021-10-05Removed permutation options for pair-scan for now since they're probably not ↵zsloan
necessary
2021-10-04Changed get_user_groups to pull both the ID and details in the for loop from ↵zsloan
group_list by using group_list.items()
2021-10-04Add group link for user member groupszsloan
2021-10-04Fixed some issue with the way the Pair Scan tab appeared in ↵zsloan
show_trait_mapping_tools.html
2021-10-04wqflask: resource_manager: Remove loggerBonfaceKilz
2021-10-04Remove "_scripts.html" and all it's referencesBonfaceKilz
2021-10-04new_security: login_user.html: Delete commented out blockBonfaceKilz
2021-10-04Replace hard-coded e-mails with gn-proxy queriesBonfaceKilz
* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the proxy to see the access rights of a given user.
2021-10-04Rename "admin_login_required" to "edit_access_required"BonfaceKilz
2021-09-30Fixed table/column widths and removed some unused codezsloan
2021-09-28Fixed parameter name for mapmodel_rqtlzsloan
2021-09-28Merge branch 'feature/add_rqtl_pairscan' of github.com:zsloan/genenetwork2 ↵zsloan
into feature/add_rqtl_pairscan
2021-09-28Added table for pair scan results to templatezsloan
2021-09-27Apply pep-8 formattingBonfaceKilz
2021-09-27Remove variable-- named after a python keyword-- called "list"BonfaceKilz
2021-09-27Remove lengthy stack trace for 404, 400, 408 status codesBonfaceKilz
The stack trace causes the log file to grow into unmanageable sizes over time.
2021-09-22Removed the Control for (marker) option from R/qtl for now since Danny ↵zsloan
mentioned it isn't working correctly
2021-09-22Fixed issue where the control marker parameter was being passed incorrectly ↵zsloan
to GN3 (should be just 'control' but was previously passed as 'control_marker')
2021-09-22Only show most search page options if results exist; otherwise provide a ↵zsloan
link back to the home page
2021-09-22Added type='button' to the Delete Collection button within collections/view, ↵zsloan
since without it it attempts to submit the form encapsulating the button (export in this case)
2021-09-22Remove references to reaper_version and code for running old qtlreaperzsloan
2021-09-20Returned the GN1 url to gn1.genenetwork.org since it's apparently working ↵zsloan
well enough again now that some issues have been fixed
2021-09-20Removed the reaper_version selection option, since original qtlreaper is no ↵zsloan
longer supported
2021-09-20Added back the option to edit privileges on trait pages, since the metadata ↵zsloan
edit button had replaced it
2021-09-16wqflask: views: Redirect to the correct URL after phenotype updateBonfaceKilz
2021-09-14Replace / with _ in the mapping results filename, due to / causing issues ↵zsloan
with being translated to directories
2021-09-14Replace / with _ in the file hashes in rqtl_mapping.py, since they get ↵zsloan
translated to directories
2021-09-13Change mapping export filename to use the path passed from run_mapping, ↵zsloan
instead of the generic mapping_results.csv
2021-09-13Change mapping export filename to use the trait hashzsloan
2021-09-13Add trait name and trait hash to exported mapping resultszsloan
2021-09-13Include some extra metadata in the mapping page details (in addition to the ↵zsloan
figure itself)
2021-09-13Change Genotype File text to only show the meaningful genotype deescriptionzsloan
2021-09-13Temporarily point the View in GN1 button to gn1-lily.genenetwork.org since ↵zsloan
some features aren't working on gn1.genenetwork.org yet
2021-09-11Add Jupyter Notebook Launcher to Tools dropdown menujgart
2021-09-10Fix issue with the way the template was checking if genofile_string was set; ↵zsloan
it was receiving an empty string, so the previous logic made it think there was a genofile string when there wasn't one
2021-09-10Removed encoding, since it's apparently not needed since the Python 3 ↵zsloan
switchover (and was causing there to be no matches between user IDs and groups)
2021-09-09Change trait name to display name in the metadata at the top of the page (so ↵zsloan
group codes will be includes in phenotype IDs
2021-09-09Replaced trait name with trait display name in display_mapping_results so ↵zsloan
the group codes will be includes in phenotype IDs
generated by cgit v1.2.3 (git 2.44.0) at 2024-11-25 15:01:32 +0000