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AgeCommit message (Expand)Author
2013-05-17More working on security templatesSam
2013-05-16Switching between login and register working pretty wellSam
2013-05-16Before trying a new modal windowSam
2013-05-10Sign in template looking even betterSam
2013-05-10Sign in template looking pretty goodSam
2013-05-10More security changesSam
2013-05-10Have the beginnings of a user_manager workingSam
2013-05-09Added original security templates (so we can change them)Sam
2013-05-09Working on user registrationSam
2013-05-08Merge branch 'flask' of git://github.com/leiyan/genenetwork into flaskZachary Sloan
2013-05-08Worked on correlation page...Wrote function in dataset.py that gets all the traits in a dataset and their sample values Lei Yan
2013-05-07Made some progress adding species/group tabs to the quick search result page to...make the results easier to navigate Zachary Sloan
2013-05-02Got quick search code running (but not displaying properly)...Code that processes subset of snps works, in process of putting into a class Zachary Sloan
2013-04-30Merge branch 'flask' of git://github.com/leiyan/genenetwork into flaskZachary Sloan
2013-04-30Changed path to log file...Added server port to configuration file Lei Yan
2013-04-30Did a little with correlation_plot.pyZachary Sloan
2013-04-26Added file that checks how much time is added to a loop's runtime by print st......Continued work on file that processes each individual chunk of the snp iterator/plink input Zachary Sloan
2013-04-24Began writing code that writes some objects used in LMM to redis...and writes/reads eachitem in the plink_input Zachary Sloan
2013-04-24Added original pylintrcZachary Sloan
2013-04-24Checking in quick_search_table.py before using pylinZachary Sloan
2013-04-24Fixed issue with the part of quick_search_table.py that loads phenotype traitsZachary Sloan
2013-04-23Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py Zachary Sloan
2013-04-19Fixed the issue with the x-axis coordinates for marker regression plotZachary Sloan
2013-04-18The plink_input is split into chunks that are stored in temp_data, but...we might decide to store it differently Zachary Sloan
2013-04-18LMM code now reads in gzipped pickled plink snp iterator objectZachary Sloan
2013-04-18input file is now loaded by pickleZachary Sloan
2013-04-17Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file Zachary Sloan
2013-04-17Added a benchmark for running the chunks code on the list of snpsZachary Sloan
2013-04-17Renamed chunk_test.py to chunks.pyZachary Sloan
2013-04-17Updated chunk_test.pyZachary Sloan
2013-04-17Added chunk_test.py which compared my/ and sam's split into...chunks algorithms' accuracy/speed Zachary Sloan
2013-04-17Wrote code that tests the effectiveness of the function that divides a...list into a given number of chunks Zachary Sloan
2013-04-17Fixed small issue with the divide_into_chunks function...that caused one too many chunks to be created Zachary Sloan
2013-04-16Wrote functions that divide a list into a specified number of chunks...(to be used on the list of snps for the LMM code) Zachary Sloan
2013-04-16Checking in before making some changesZachary Sloan
2013-04-16Put most of the code calculating human association statistics in...lmm.py into a separate function Zachary Sloan
2013-04-11Fixed a bug with quick_search_table.py...Edited generate_probesetfreeze_file.py to try running it on the dataset with incorrect regression lines Zachary Sloan
2013-04-10Created template for quick search page...Fixed a couple bugs with quick_search_table.py Zachary Sloan
2013-04-09Have quick search working for phenotypesZachary Sloan
2013-04-09Nick's code works fine with human data...Added option to limit results based on lod score (which also changes the y-axis of the plot) Zachary Sloan
2013-04-05Loading bar now correctly shows the time to completion...and the code seems to run correctly Zachary Sloan
2013-04-05Made change to nginx config file that seems to have fixed the...504 gateway timeout issue with the human datasets Zachary Sloan
2013-04-05Got Nick's code working with the MDP datasets under the BXD group,...but with only BXD strains Zachary Sloan
2013-04-05Made changes to get pylmm code working with HMDP datasetsZachary Sloan
2013-04-02Finished adding code that uses the plink genotype data if...a human dataset and json data if any other species Zachary Sloan
2013-04-02Committing before splitting code that runs pylmm with plink files...and code that runs it with json Zachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-28quick_search_table.py seems to be running OK for the PublishXRef...table, but will need to check later to make sure Zachary Sloan
2013-03-28quick_search_table.py now seems to run correctly for ProbeSetXRef...rows Zachary Sloan
2013-03-28Committing before putting quick_search_table code in classesZachary Sloan
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