| Age | Commit message (Expand) | Author |
|---|
| 2016-10-12 | Removed unused gemma code from marker_regression.py and changed the order of ... | zsloan |
| 2016-10-07 | Removed qtlreaper code from marker_regression and moved it to a separate file....Fixed CTL template to display correct number of traits (previously it would display 1 fewer than you selected).
| zsloan |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable
| Pjotr Prins |
| 2016-10-06 | URLs: replaced non-functioning URLs | Pjotr Prins |
| 2016-10-06 | Footer: updating URLs | Pjotr Prins |
| 2016-10-06 | Do not open new page in browser on URL | Pjotr Prins |
| 2016-10-06 | Removed dead URL | Pjotr Prins |
| 2016-10-06 | URL: replaced dead Memphis URL with current GN2 machine | Pjotr Prins |
| 2016-10-06 | URL: prevent opening new pages | Pjotr Prins |
| 2016-10-06 | URL: updated Amigo reference on front page | Pjotr Prins |
| 2016-10-06 | URLs: update GO database URL and removed opening new browser pages | Pjotr Prins |
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins |
| 2016-10-06 | CTL requires 2 traits minimally. Also use traits/phenotypes consistently | Pjotr Prins |
| 2016-10-05 | CTL now displays proper error if fewer than 4 traits are selected. Also, WGCN......I also improved the formatting for the html for both CTl and WGCNA Analysis.
| zsloan |
| 2016-10-05 | Show datasets only on debug | Pjotr Prins |
| 2016-10-05 | Minor edit | Pjotr Prins |
| 2016-10-05 | Reverted on genotype selector on page show_trait_mapping_tools.html - pending... | Pjotr Prins |
| 2016-10-05 | print statements should be logger | Pjotr Prins |
| 2016-10-05 | print statements should be logger | Pjotr Prins |
| 2016-10-05 | Merge branch 'zsloan' into json | Pjotr Prins |
| 2016-10-05 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
| 2016-10-04 | Fixed issue that caused adding to existing collections when not logged in to ......The problem was that it would get the collection name from the "new_collection" field instead of the "existing_collections" dropdown.
| zsloan |
| 2016-10-04 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
| 2016-10-03 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2016-10-03 | Fixed problem that caused R/qtl with permutations to not work correctly | zsloan |
| 2016-10-03 | Moved rqtl mapping code out of marker_regression and into its own file....Later we will want to run all mapping methods outside of the web server, though
| zsloan |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins |
| 2016-10-03 | Config: use server port setting | Pjotr Prins |
| 2016-10-03 | Error page: reduce cookie size | Pjotr Prins |
| 2016-10-02 | Error page: trim error messages | Pjotr Prins |
| 2016-10-02 | Errors: added time stamps in UTC | Pjotr Prins |
| 2016-10-02 | Error page: also display the URL | Pjotr Prins |
| 2016-10-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins |
| 2016-10-02 | Error page: use cookies to fixate the animation for one error | Pjotr Prins |
| 2016-10-02 | Error: remove test error | Pjotr Prins |
| 2016-10-02 | Error screen improvements with animated gifs | Pjotr Prins |
| 2016-09-30 | Merge pull request #192 from lyan6/master...Fix global search "il6" for "Internal Server Error". Add single quote… | Pjotr Prins |
| 2016-09-30 | Add missing __init__.py | Pjotr Prins |
| 2016-09-30 | Add logging for qtlreaper | Pjotr Prins |
| 2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into M... | Lei Yan |
| 2016-09-27 | Conflict in wqflask/wqflask/templates/show_trait_mapping_tools.html | zsloan |
| 2016-09-26 | Test: mechanical Rob executes scanone test | Pjotr Prins |
| 2016-09-25 | Logger: use output for assessing mapping parameters | Pjotr Prins |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
| 2016-09-25 | Settings: enforce MAPPING_PATH only when running plink_gemma | Pjotr Prins |
| 2016-09-25 | I was getting below error with the small database. This commit, at least, does...not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
| Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-13 | Save Image now works for Network Graph and downloads current graph as a png | zsloan |
| 2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ......Added "Reset" option to network graph that returns all the nodes/edges
Made the visualization options area in the network graph a little wider
| zsloan |
