| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-06-07 | R/qtl pair scan now works again, though it takes a while (10-15 minutes). | zsloan | |
| Added pop-up warning user about run-time for pair scan Fixed links to GN2 github on the index page Fixed a couple issues with the search result page text Changed the appearance of the trait sample data table to match other tables (darker headers, etc) | |||
| 2016-06-03 | Made a bunch of changes to correlation and search result tables (mainly the ↵ | zsloan | |
| former) and made all tables a little more compact by lessenning the padding | |||
| 2016-06-03 | Changed appearance of tables to more easily differentiate them from the rest ↵ | zsloan | |
| of the page (still not totally pleased with them though) Fixed issue where some N/A lrs scores and additive effects were being changed to 0's, which was misleading and kept them from always being sorted at the bottom. They now appear as N/A. | |||
| 2016-06-02 | Fixed some issues with global search result tables, including: | zsloan | |
| - Wrong digits for mean expression and additive effect - Bad loooking width on some columns, like Max LRS Location - Janky functionality for column resizing and drag-and-dropping (just disabled these functions) - Geno and Pheno global search tables weren't built in the same way, so now they are I also fixed the sorting to always put N/A's at the bottom of the table by editing naturalSort.js | |||
| 2016-06-01 | Changed global gene search to no longer use server-side processing | zsloan | |
| 2016-05-31 | Fixed error when MrnaAssay search results didn't have a geneid | zsloan | |
| 2016-05-31 | Renamed TEXTDIR to GENERATED_TEXT_DIR | Pjotr Prins | |
| 2016-05-31 | Allow the json dir to be in the old location. | Pjotr Prins | |
| 2016-05-27 | Fixed issue where the Non-BXD (or whatever group/inbred set) table would ↵ | zsloan | |
| show up when there should be no such samples Fixed Interquartile Range link in basic statistics table | |||
| 2016-05-27 | Improved appearance of p values below slider in correlation menu on trait ↵ | zsloan | |
| page. The way I did it is really awful (a bunch of 's) but nothing else seemed to work, including putting a div or span with a fixed width between them | |||
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-26 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-26 | Merge branch 'master' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2016-05-26 | Issue with certain samples (like BXD65a, ones were there are multiple for a ↵ | zsloan | |
| single BXD or whatever) should be fixed for different mapping methods and data set types Renamed directories with genotypes so tools.py didn't need to be changed (which might mess up other deployments) Fixed error when searching genotype data sets | |||
| 2016-05-23 | Reaper mapping results are now correct and account for samples with two ↵ | zsloan | |
| names (like BXD65a) R/qtl and PYLMM still not working with the change and bootstrap results are also still wrong, so need to fix those issues. | |||
| 2016-05-18 | Merge branch 'staging' of https://github.com/genenetwork/genenetwork2 | zsloan | |
| 2016-05-18 | Updated dataset selection dropdown menus and fixed error caused by traits ↵ | zsloan | |
| with no description | |||
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 into development | zsloan | |
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2016-05-17 | Correlations are now much faster after I disabled fetching the sample data ↵ | zsloan | |
| for each result trait | |||
| 2016-05-13 | Fixed path for IM bar plot | Pjotr Prins | |
| 2016-05-13 | Removing ref. to HTMLPATH | Pjotr Prins | |
| 2016-05-13 | WebqtlConfig.py: Constant handling | Pjotr Prins | |
| 2016-05-13 | Fix paths for images | Pjotr Prins | |
| 2016-05-10 | Correlation successfully uses materialized views and parallel processing, ↵ | zsloan | |
| but for some reason is taking an immense amount of time so need to troubleshoot that Changed order of mapping options to display Interval Mapping first Changed some links to no longer open in new tab/window | |||
| 2016-05-10 | Merge branch 'master' of github.com:genenetwork/genenetwork2 into merge_zach | Pjotr Prins | |
| 2016-04-29 | Fixed database link in trait page details | zsloan | |
| 2016-04-29 | Also fixed links in statistics section (for normal probability plot) and ↵ | zsloan | |
| removed 'target=_blank's | |||
| 2016-04-29 | Fixed links in correlation descriptions on trait page and removed ↵ | zsloan | |
| target=_blank (so will not open in new window unless user specifies) Fixed javascript so description changes when user changes the method and "Type" option is removed for literature correlation | |||
| 2016-04-29 | URL: removed _blank from first URL | Pjotr Prins | |
| 2016-04-29 | Updated mailing list URL | Pjotr Prins | |
| 2016-04-29 | Plotting: using cairo-png for headless environments | Pjotr Prins | |
| 2016-04-29 | Merge | Pjotr Prins | |
| 2016-04-28 | Added option to export permutation results for mapping page | zsloan | |
| Added data_scale to dataset objects and basic stats table will now check data scale when calculating range Made interval analyst results table work with datatables Changed the appearance of the basic stats table some by giving it a border | |||
| 2016-04-28 | Changed the defunct GeneRIF URL to a working Wikipedia URL (which | Pjotr Prins | |
| also points to the non-working NCBI link) | |||
| 2016-04-26 | Interval mapping: fix font and image path | Pjotr Prins | |
| 2016-04-26 | Merging with Zach's latest branch | Pjotr Prins | |
| 2016-04-25 | Interval Analyst table mostly working, just need to work out a few more things | zsloan | |
| 2016-04-22 | Fixed issue where manhattan plot setting wasn't being carried over to single ↵ | zsloan | |
| chromosome view for mapping results Removed a useless "if 1 == 1" line that was in marker_regression_gn1.py for testing. | |||
| 2016-04-20 | Interval Mapping now correctly does interval mapping if Marker Regression ↵ | zsloan | |
| isn't checked (it used to just "connect the dots" of the marker regression output) Changed "Manhattan Plot" label to "Marker Regr." to accurately reflect what the option does | |||
| 2016-04-20 | Added borders to stats table in trait page | zsloan | |
| 2016-04-20 | Fix typo | Pjotr Prins | |
| 2016-04-20 | A few fixes to get the webserver running again | Pjotr Prins | |
| 2016-04-20 | Add file | Pjotr Prins | |
| 2016-04-20 | trasnform to transform | DannyArends | |
| 2016-04-20 | Changed the file stem of generated pictures to CTL | DannyArends | |
| 2016-04-20 | Adding small figures per trait, so that users can see CTL and QTL for each ↵ | DannyArends | |
| individual phenotype | |||
| 2016-04-20 | Adding parameters, and passing them to the CTL algorithm | DannyArends | |
| 2016-04-20 | Working on the output template of CTL | DannyArends | |
| 2016-04-20 | Updates to the CTL code adding the significant results to the result object | DannyArends | |
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