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2015-03-13& runlmm.py: added assertions for default runPjotr Prins
2015-03-12lmm: use deep-copy to avoid side-effectsPjotr Prins
2015-03-12weird fix for lmm result - Python weirdnessPjotr Prins
2015-03-12Check GPjotr Prins
2015-03-12Debug infoPjotr Prins
2015-03-12process_plink.py: remove unused filePjotr Prins
2015-03-12Combined searches now work for most terms...Fixed appearance of the scatterplot matrix Changed pylmm code back because of an error after I had switched to Pjotr's code Zachary Sloan
2015-03-12Just committing changes to search so I can pull to production branchZachary Sloan
2015-03-11runlmm.py: messagePjotr Prins
2015-03-11Adding multi-core kinship.pyPjotr Prins
2015-03-11lmm.py: change message on running from CLIPjotr Prins
2015-03-11& Added testing option, now the results matchPjotr Prins
2015-03-10NormalisationPjotr Prins
2015-03-10lmm.py: debugging outputPjotr Prins
2015-03-10Missing genotypes and normalizePjotr Prins
2015-03-10Populationg Redis from TSV dataPjotr Prins
2015-03-10Refactored tsvreader outPjotr Prins
2015-03-10Factoring out tsvreadersPjotr Prins
2015-03-10convertlmm.py: add SNP namesPjotr Prins
2015-03-10Turn HAB encoding into pylmm genotypingPjotr Prins
2015-03-09Add HAB encodingPjotr Prins
2015-03-09Write genotype file non-transposedPjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09plink: missing values in bimPjotr Prins
2015-03-09Now we can use print in lamdbaPjotr Prins
2015-03-09Not using numpy - is part of the callerPjotr Prins
2015-03-09plink: no need to know the number of SNPs, but you need INDsPjotr Prins
2015-03-09plink supportPjotr Prins
2015-03-09convertlmm.py: options.genoPjotr Prins
2015-03-09convertlmm.py: plink supportPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-07Write phenotypesPjotr Prins
2015-03-07Kinship converterPjotr Prins
2015-03-05Kinship file format support (reader and writer)Pjotr Prins
2015-03-05Convert textual kinship filePjotr Prins
2015-03-05Helpers to split out functionalityPjotr Prins
2015-03-05Removed execution flag x from filesPjotr Prins
2015-03-03fix printPjotr Prins
2015-03-01WarningPjotr Prins
2015-03-01Add warning to running lmm.py from the command linePjotr Prins
2015-02-28Started adaptations for introducing multi-core versionPjotr Prins
2015-02-20Splitting out handlersPjotr Prins
2015-02-20Moved pylmm scripts that are not used by GN2Pjotr Prins
2015-02-20Remove empty dirPjotr Prins
2015-02-20Split out behaviour for calling lmm from GN2 or (testing) CLIPjotr Prins
2015-02-13Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2015-02-13Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master Lei Yan
2015-02-11Added pop-up for empty searches...Replaced pyLMM code with one version of Pyotr's updated faster code Began fixing search to work for combined searches Made login screen look better and fixed for empty fields Zachary Sloan
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