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2020-05-04Working on covariate mapping, making sure the addcovars are numericDanny Arends
2020-04-29Adding some debug, so we have some info in the outputDanny Arends
2020-04-29Fixing loading of the ITP data as a 4way cross, worked on ↵Danny Arends
http://gn2-test3.genenetwork.org/
2020-04-28Remove old menu filePjotr Prins
2020-04-28Merge with conflictsPjotr Prins
2020-04-28Track requests and check for attribute so at least we get the right error:penguin2Pjotr Prins
GeneNetwork penguin2:genenetwork2:2.11-rc2-penguin2-0bca65695 http://gn2-test3.genenetwork.org/ ( 1:31PM UTC Apr 28, 2020) MISCONF Redis is configured to save RDB snapshots, but is currently not able to persist on disk. Commands that may modify the data set are disabled. Please check Redis logs for details about the error. (error) File "/home/wrk/opt/genenetwork2/lib/python2.7/site-packages/redis/connection.py", line 717, in read_response
2020-04-28menuPjotr Prins
2020-04-27Added timeout for when/if it does the REST API query, so it doesn't hang ↵zsloan
indefinitely
2020-04-27Made change that should allow dataset structure to be loaded from Redis ↵zsloan
instead of the JSON file without breaking things
2020-04-26Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
2020-04-26Updated menuPjotr Prins
2020-04-26Merge master and testingmasterPjotr Prins
2020-04-26Removed the code that was still writing the database menu JSONzsloan
2020-04-24Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-24Merge pull request #381 from acenteno/testingzsloan
Add colleagues - credits link
2020-04-24Made a fix that should prevent the issue where new datasets cause an error ↵zsloan
when they're in search results
2020-04-23Changed Trait to Marker for the stats table when the trait is a genotype traitzsloan
2020-04-23Fixed issue where covariates weren't being passed when zooming in or remappingzsloan
Added loading paage for zooming/remapping Added temporary option for checking mapping scale in .geno files
2020-04-23Removed a line that was excluding Macaque from the drop-downs (and thus from ↵zsloan
the JSON file causing an error in the global search)
2020-04-22Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-22Fixed a variety of issues related to users registering and logging inzsloan
GN2 should now work when Redis is empty
2020-04-21Update base.htmlacenteno
At the end of this text in the footer, it should read ....Jintao Wang, Robert W. Williams, and colleagues. We need to add Saunak Sen in the list right by Pjotr Prins. The link at the end to "colleagues" is broken.
2020-04-21Update views.pyacenteno
Add credits link
2020-04-21Create credits.htmlacenteno
Colleagues credit page
2020-04-21Update base.htmlacenteno
Fix footer colleagues link to credits
2020-04-21Update tutorials.htmlacenteno
Updated to v7
2020-04-21Update base.htmlacenteno
Change position to tutorials link
2020-04-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-21Update tutorials.htmlacenteno
Fix the title header
2020-04-21Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-21Create tutorials.htmlacenteno
Link to the actual power point presentation
2020-04-21Update views.pyacenteno
Add tutorials link under News
2020-04-21Update base.htmlacenteno
2020-04-17Added text for Range search to the search result pagezsloan
2020-04-16Fixed issue that caused submitted traits to not open properly when submitted ↵zsloan
to a group with case attributes + fixed a link to GN1
2020-04-16Changed and re-ordered tools on View Collection page in the same way as the ↵zsloan
search result and correlation pages
2020-04-16Many changes, including:zsloan
- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-16Made change that causes new traits to be at the top of a collection + ↵zsloan
prevents duplicates
2020-04-13Changed Locus to Marker in table and fixed an issue with trying to zoom in ↵zsloan
on a chromosome after downloading permutation results
2020-04-13Fixed issue that caused export for HET3-ITP traits to not work due to the ↵zsloan
backslash in one of the case attribute names + added a couple links for stats table items
2020-04-06Added Mean column for phenotype traits in search and global search result tableszsloan
2020-04-04Changed Y axis on permutation histogram from Frequency to Countzsloan
2020-04-04Updated R/qtl description textzsloan
2020-04-04Added Chart Studio back to trait page Plotly figures and switched the ↵zsloan
PNG/SVG download icons; also upgraded Plotly, though I'm sure we'll want to move that out of git later
2020-04-04Indices on the trait page sample table are now static, to allow for ↵zsloan
selecting ranges of indices after sorting a column
2020-04-03Added option to select cofactors from collection for R/qtlzsloan
Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-04-03Fixed permutation histogram to show correct LRS/LOD measure on X axiszsloan
2020-04-02Fixed a dumb issue that broke the buttons on trait list pages like search ↵zsloan
results or correlation results
2020-04-01Forgot to rearrange search result page buttons in previous commit, plus ↵zsloan
fixed an issue where .csv was missing from some filenames
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