genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2021-06-01	templates: edit_trait: Add "changed" class to hidden input values...When a form element changes, it's marked as changed. Only input elements with "changed" get submitted. Since we need to submit the "hidden" input fields, we add "changed" to them anyways.	BonfaceKilz
2021-06-01	templates: edit_trait: Only submit form elements that have changed...We only submit form elements that have changed, and use that to update the relevant tables. See: https://stackoverflow.com/a/5221915	BonfaceKilz
2021-05-28	Added comment clarifying the situation with views.py imports	zsloan
2021-05-28	Re-added collect import in views.py since it was removed before (I'm guessing...	zsloan
2021-05-27	Merge pull request #579 from zsloan/feature/rqtl_with_gn3...Use GN3 API for R/qtl	zsloan
2021-05-27	Fix the way Mock is initialized	zsloan
2021-05-27	Change test_rqtl_mapping.py to account for full results being returned from t...	zsloan
2021-05-27	Fixed way MockGroup was initialized	zsloan
2021-05-27	Forgot to import dataclass	zsloan
2021-05-27	Fixed syntax mistake when creating dataclass in test_rqtl_mapping.py	zsloan
2021-05-27	Removed parts of test_rqtl_mapping.py referring to process_perm_results and p...	zsloan
2021-05-27	Updated test_run_mapping.py to account for attribute keys being checked as lo...	zsloan
2021-05-27	Improved test_rqtl_mapping.py with Bonface's recommendation of uses dataclasses	zsloan
2021-05-27	Make all attribute names lowercase to deal with situations where sometimes th...	zsloan
2021-05-27	Add code writing perm_strata to phenotype input file in rqtl_mapping.py + fix...	zsloan
2021-05-26	wqflask: views: Update comment when data is edited...For now the exact column that's edited isn't tracked.	BonfaceKilz
2021-05-26	wqflask: views: Import "fetchone" & "update" from "gn3.db"	BonfaceKilz
2021-05-26	Use @admin_login_required to only enable Rob to do edits to traits...* wqflask/wqflask/decorators.py (admin_login_required): New decorator. * wqflask/wqflask/views.py (edit_trait): Use admin_login_required decorator.	BonfaceKilz
2021-05-26	wqflask: views: Add method that updates the trait...* wqflask/wqflask/views.py (update_trait): New function.	BonfaceKilz
2021-05-26	templates: edit_trait: Submit publish_xref data	BonfaceKilz
2021-05-26	wqflask: views: Remove unused imports	BonfaceKilz
2021-05-26	wqflask: views: Make imports top-level	BonfaceKilz
2021-05-26	templates: edit_trait: Make form functional(add ability to submit)	BonfaceKilz
2021-05-26	wqflask: views: Add edit_trait page...Should add some some authentication logic to this later since it's not supposed to be accessible to everyone.	BonfaceKilz
2021-05-26	templates: edit_trait: Update edit btn to point to editing endpoint	BonfaceKilz
2021-05-26	wqflask: views: Add extra endpoint to display individual trait edit...* wqflask/wqflask/views.py (show_edit_trait_page): New function/ end-point.	BonfaceKilz
2021-05-26	templates: show_trait_details: Add an "[edit]" button	BonfaceKilz
2021-05-26	tests: test_gen_menu: Remove get_species	BonfaceKilz
2021-05-26	api: gen_menu: Replace get_species with get_all_species from gn3...* wqflask/wqflask/api/gen_menu.py (gen_dropdown_json): Use new `get_all_species` function. (get_species): Remove it.	BonfaceKilz
2021-05-26	db: webqtlDatabaseFunction: Remove comment	BonfaceKilz
2021-05-26	db: webqtlDatabaseFunction: Remove logger info	BonfaceKilz
2021-05-26	wqflask: database: Replace one-line function with it's body...* wqflask/wqflask/database.py (init_db): Remove it.	BonfaceKilz
2021-05-26	templates: edit_trait: Add form for editing a dataset (WIP)	BonfaceKilz
2021-05-25	Fixed/shortened get_categorical_variables function and correctly pass them to...	zsloan
2021-05-25	Removed code that processes output files, since this functionality is moved t...	zsloan
2021-05-22	Fixed the mocked return_value for requests.post to fix broken test	zsloan
2021-05-22	Fixed a couple broken tests	zsloan
2021-05-22	Rewrote test_rqtl_mapping.py, though haven't done tests for all functions yet	zsloan
2021-05-21	Removed a couple unused parameters for run_rqtl	zsloan
2021-05-21	run_rqtl now reads in permutation output	zsloan
2021-05-20	Re-implemented R/qtl to get the results from the GN3 API	zsloan
2021-05-18	Last commit failed to correctly change Y-axis position; this should fix that	zsloan
2021-05-18	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan
2021-05-18	Fixed issue that caused the sample values in the Haplotype Analyst to be off ...	zsloan
2021-05-17	handle None for tissue input data	Alexander Kabui
2021-05-14	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing	zsloan
2021-05-14	Changed logic in SampleList to set num_cases_exists to False if all existing ...	zsloan
2021-05-14	Changed logic in has_num_cases to ignore N=1	zsloan
2021-05-13	pep8 formatting & delete comments	Alexander Kabui
2021-05-13	integrate comute corr for top results in ui	Alexander Kabui