Age | Commit message (Collapse) | Author | |
---|---|---|---|
2022-08-23 | integrate code for fetching traits metadata | Alexander_Kabui | |
2022-08-23 | function to fetch metadata | Alexander_Kabui | |
2022-08-18 | bulk fetch n number of traits type probeset | Alexander_Kabui | |
2022-08-17 | Use context managers for database cursors | Frederick Muriuki Muriithi | |
2022-08-17 | Merge branch 'chores/rust-enhancements' of ↵ | Frederick Muriuki Muriithi | |
github.com:Alexanderlacuna/genenetwork2 into Alexanderlacuna-chores/rust-enhancements | |||
2022-08-16 | Merge dicts into single result | Frederick Muriuki Muriithi | |
2022-08-16 | Convert list items to single dict | Frederick Muriuki Muriithi | |
2022-08-16 | rename boolean variables | Alexander_Kabui | |
2022-08-16 | linter fixes | Alexander_Kabui | |
2022-08-16 | enable compute all for test | Alexander_Kabui | |
2022-08-16 | index error fix | Alexander_Kabui | |
2022-08-16 | remove flask g object | Alexander_Kabui | |
2022-08-16 | minor fixes for computing all correlations | Alexander_Kabui | |
2022-08-15 | add default values for num overlap,corr_coeff | Alexander_Kabui | |
2022-08-14 | init:perform top n sample for probes | Alexander_Kabui | |
2022-08-12 | Revert "Check for keys before using them." | Frederick Muriuki Muriithi | |
This reverts commit a1cbc12f843bbdc1759d5acac5ae3630fb5d4b81. | |||
2022-08-12 | Add a profiling script | Frederick Muriuki Muriithi | |
Add a script to enable profiling the code. | |||
2022-08-12 | Fix some issues with the tests. Add notes in code for improvements. | Frederick Muriuki Muriithi | |
2022-08-12 | Refactor: separate the three correlation types | Frederick Muriuki Muriithi | |
Refactor the code such that each correlation type (sample, tissue, literature) is computed in its own function. This makes the code clearer, and helps reduce repetition. | |||
2022-08-12 | Check for keys before using them. | Frederick Muriuki Muriithi | |
2022-08-12 | Update format to prevent tissue correlation from failing | Frederick Muriuki Muriithi | |
Update the data format of returned values so that it conforms with expectatitions. | |||
2022-08-12 | Fix formatting for legibility | Frederick Muriuki Muriithi | |
2022-08-12 | code to merge results;minor fixes | Alexander_Kabui | |
2022-08-12 | compute top n tissue results | Alexander_Kabui | |
2022-08-12 | add code to compute top n tissue results | Alexander_Kabui | |
2022-08-12 | Fix minor bug. | Frederick Muriuki Muriithi | |
2022-08-12 | Integrate rust correlations. Deduplicate similar code. | Frederick Muriuki Muriithi | |
- Use rust correlations rather than the slower python one - Remove code duplicated in the `wqflask/wqflask/correlation/rust_correlation.py` module within the `compute_correlation_rust` function. | |||
2022-08-11 | Add data-trait-info attribute to checkboxes on search results page | zsloan | |
Currently there's a separate trait_info_str function in search_results.py, because search_results.py doesn't build the trait objects (so it can't use the one in collect.py unless I change that to accept traits as either a GeneralTrait class or dict - which might be better, I'm not sure) | |||
2022-08-09 | Display the probeset name in the editing form | Munyoki Kilyungi | |
* wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to the h1 tag. | |||
2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page | Munyoki Kilyungi | |
* wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button. Make button green. Move form element into the "container" div. Add "container" class to form. Left justify labels, and the button. Remove ":" from labels. | |||
2022-08-09 | Delete "diff" section | Munyoki Kilyungi | |
For both the edit phenotype and probeset pages, the diffs can be viewed from history.html. * wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs" section. * wqflask/wqflask/templates/edit_probeset.html: Ditto. | |||
2022-08-09 | Remove "diff" logic from edit_probeset | Munyoki Kilyungi | |
* wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for fetching diff. Move that... (show_history): ... here * wqflask/wqflask/templates/edit_probeset.html: Update template to show diffs in a history.html. Reposition and rename the h1 tag of this page. | |||
2022-08-09 | Update h1 title of history page | Munyoki Kilyungi | |
ATM, we don't show the name of the phenotype whose history we are changing. That may be updated in a future commit. * wqflask/wqflask/templates/edit_history.html: Reword h1 and remove "{{}}" which results in a jinja error. | |||
2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi | |
2022-08-09 | Integrate rust correlation for "sample" correlation selection | Frederick Muriuki Muriithi | |
Integrate the use of the rust code to compute the correlations for the "sample" correlation selection. | |||
2022-08-09 | Pass trait values (X) as list not string | Frederick Muriuki Muriithi | |
The trait values (X values) are converted to JSON within the `run_correlation` call. Since JSON has the ability to represent lists of objects, there is no point for the added conversion to and from strings. | |||
2022-08-08 | remove unnessary append to list | Alexander_Kabui | |
2022-08-08 | remove test;test is redundant | Alexander_Kabui | |
2022-08-08 | tests refactoring | Alexander_Kabui | |
2022-08-05 | Include partial_correlations.js in the search page template | zsloan | |
2022-08-01 | Remove console logs from scatterplot.js | zsloan | |
2022-08-01 | Change Make Default button to Save Settings | zsloan | |
2022-08-01 | Add date/time to trait page export | zsloan | |
2022-08-01 | Add header/description to partial correlation page | zsloan | |
2022-08-01 | Add index column and phenotype group code to trait export | zsloan | |
2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi | |
2022-07-27 | Disable PCA when fewer than 3 traits | zsloan | |
2022-07-27 | Change some text/formatting on Correlation Matrix page | zsloan | |
2022-07-27 | Change capitalization on index page | zsloan | |
2022-07-27 | Change some text/formatting for the Scree Plot | zsloan | |