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2020-06-17Adding all the authentication stuffzsloan
2020-06-17Fixed issue caused by mapping scale sometimes being wrong + fixed Verify linkzsloan
2020-06-17Fixed issue where removing traits and then running a tool from collection ↵zsloan
page still included the removed traits
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-06-04Added back in trait info queries for situations where the proxy isn't runningzsloan
2020-06-04Really should have split this into many more commits:zsloan
- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code
2020-05-28Added lines calling proxy for publish datasets + added some resource redis ↵zsloan
queries and a missing import for the hmac functions
2020-05-23Changed row highlight color to the more pale yellow it was beforezsloan
2020-05-21More adjusting to table widthszsloan
2020-05-21Made search result table width variable again and fixed row highlighting, ↵zsloan
though later I need to go through and redo a bunch of CSS stuff
2020-05-21Fixed search page table widths by setting max-width, at least for the time beingzsloan
2020-05-20Fixed issue when some case attribute values don't exist + added phenogen ↵zsloan
link to trait page
2020-05-18Added warning that 1 is being added when doing log transform on traits with ↵zsloan
sample values between 0 and 1
2020-05-18Partial fix to issue of the top margin being too small when using R/qtl and ↵zsloan
cofactors
2020-05-18Fixed Bar Chart left margin issue and fixed issue where 0 values didn't have ↵zsloan
+1 added when doing log transforms
2020-05-18Fixed issue with phenotype correlation table and added Plotly Chart Studio ↵zsloan
link to correlation scatterplots
2020-05-12Merging Danny's changes and Bonface's changes to js importszsloan
2020-05-12Replaced redis_user_id with user_id since there's no real need for the first ↵zsloan
if things are working correctly
2020-05-12Added change for F2s in r/qtl and fixed minor issue in save_user in redis_toolszsloan
2020-05-12Mapping Rqtl using the correct way to use categorical covarsDanny Arends
2020-05-07Fixed blatseq issue and geno correlation issueblatseq_fixzsloan
2020-05-07Committing current progress on group manager + a minor fix in dataset.pyzsloan
2020-05-07Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵Danny Arends
testing
2020-05-06Merge pull request #390 from BonfaceKilz/build/use-guix-datatables-dependencyPjotr Prins
Build/use guix datatables dependency
2020-05-06Added function for getting trait data type, plus added mapping scale changes ↵itp_covariate_testingzsloan
to Danny's partially fixed R/qtl code
2020-05-06Put in TODOs for MariaDB query and Design MatrixDanny Arends
2020-05-06Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-05-06Commiting a few minor changes plus returning rqtl_mapping.py to the same as ↵zsloan
on testing branch before merging Danny's changes and testing them
2020-05-06Disable saving of RDataDanny Arends
2020-05-06Fix the covariate, added debug, more output to track what it is doingDanny Arends
2020-05-06Replace CSS dependencies for datatablesBonfaceKilz
2020-05-05Use GUIX javascript Datatables packageBonfaceKilz
2020-05-04Committing some changes for testing covariateszsloan
2020-05-04Working on covariate mapping, making sure the addcovars are numericDanny Arends
2020-05-01Aesthetic table changes to view collection and correlation result pagesproductionzsloan
2020-04-30Fixed the way it gets the N displayed on the loading pagezsloan
2020-04-29Changed a lot about how mapping scale is read and gave the option to change ↵zsloan
mapping scale when both scales are available
2020-04-29Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-29Fixed issue with global search when description field is emptyzsloan
2020-04-29Adding some debug, so we have some info in the outputDanny Arends
2020-04-29Fixing loading of the ITP data as a 4way cross, worked on ↵Danny Arends
http://gn2-test3.genenetwork.org/
2020-04-28Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingzsloan
2020-04-28Added some metadata to the trait exportzsloan
2020-04-28Remove old menu filePjotr Prins
2020-04-28Merge with conflictsPjotr Prins
2020-04-28Track requests and check for attribute so at least we get the right error:penguin2Pjotr Prins
GeneNetwork penguin2:genenetwork2:2.11-rc2-penguin2-0bca65695 http://gn2-test3.genenetwork.org/ ( 1:31PM UTC Apr 28, 2020) MISCONF Redis is configured to save RDB snapshots, but is currently not able to persist on disk. Commands that may modify the data set are disabled. Please check Redis logs for details about the error. (error) File "/home/wrk/opt/genenetwork2/lib/python2.7/site-packages/redis/connection.py", line 717, in read_response
2020-04-28menuPjotr Prins
2020-04-27Added timeout for when/if it does the REST API query, so it doesn't hang ↵zsloan
indefinitely
2020-04-27Made change that should allow dataset structure to be loaded from Redis ↵zsloan
instead of the JSON file without breaking things
2020-04-26Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testingPjotr Prins
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