genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-11-01	replace var with let in getParams() local variables	uditgulati

2020-11-01	add pagination to show_trait tables and reduce css post processing for ↵	uditgulati
	faster table loading
2020-11-01	add server side processing to search table (/search and search_result_page.html)	uditgulati

2020-11-01	change arguments for ServerSideTable class	uditgulati

2020-11-01	add row highlight on checkbox checked state	uditgulati

2020-11-01	update class name to ServerSideTable and add docstring	uditgulati

2020-11-01	replace var to let for variables in loops	uditgulati

2020-11-01	make the page more color consistent	uditgulati

2020-11-01	fix issue when empty_filed_count is not claculated	uditgulati

2020-11-01	move SnpPage to a generic class ServerSide	uditgulati

2020-11-01	cell rendering cannot be in columnDef, optimised createdRow	uditgulati

2020-11-01	remove debug log	uditgulati

2020-11-01	remove createdRow callback and move color rendering to column defs to ↵	uditgulati
	speedup rendering
2020-11-01	fix issue with column sort; put 'Gene' column data in one line	uditgulati

2020-11-01	server side processing working for snp browser	uditgulati

2020-11-01	add server side processing due to large tables in DataTables; work on ↵	uditgulati
	server-side processing API pending for sorting, paging etc
2020-11-01	export only checked rows to csv; update csv file name	uditgulati

2020-11-01	add export to CSV button to export current page	uditgulati

2020-11-01	rotate strain headers 270 deg	uditgulati

2020-11-01	align numeric data values to right, categorial values to center	uditgulati

2020-11-01	reduce gap between first and second column in form	uditgulati

2020-11-01	500 rows per page for DataTables	uditgulati

2020-11-01	fix typo in check_if_in_gene function while querying for species_id = 0	uditgulati

2020-11-01	add DataTables pagination	uditgulati

2020-11-01	make stains headers names horizontal	uditgulati

2020-10-31	Removed a line adding the ceiling of the Max LRS to the Y axis, since it has ↵	zsloan
	the potential to cause an axis tick to appear above the figure * wqflask/wqflask/marker_regression/display_mapping_results.py - Removed a line adding the ceiling of the max LRS/LOD value to the Y axis
2020-10-31	remove redundant classes	Alexanderlacuna

2020-10-31	use descriptive variable names	Alexanderlacuna

2020-10-31	Use more descriptive variable and class names	Alexanderlacuna

2020-10-30	add test for get_export_metadata	Alexanderlacuna

2020-10-30	Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵	Alexanderlacuna
	test-branch
2020-10-29	Fixed issue with single-chromosome mapping after the bootstrap fix and fixed ↵	zsloan
	error that occurred if either bootstrap or permutations were set to 0 * wqflask/wqflask/marker_regression/display_mapping_results.py - Cast self.qtlresults 'chr' as a string since the comparison between it and the chromosome names was faililng due to numeric chromosomes being int type + used a list comprehension that converts None to an empty string when creating a comma-joined string from the list of mapping output files
2020-10-29	Merge branch 'testing' of github.com:genenetwork/genenetwork2 into ↵	zsloan
	reaper_bootstrap_fix
2020-10-29	add test for show_trait	Alexanderlacuna

2020-10-29	Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into ↵	Alexanderlacuna
	test-branch
2020-10-29	Merge pull request #469 from BonfaceKilz/bug/fix-cookies-verification	BonfaceKilz
	Bug/Fix cookie verification bug
2020-10-29	resolve merge conflict	Alexanderlacuna

2020-10-29	format file	Alexanderlacuna

2020-10-29	remove print statement in for loop	Alexanderlacuna

2020-10-29	add test for show_trait/export_trait_data	Alexanderlacuna

2020-10-29	Merge pull request #471 from BonfaceKilz/bug/replace-map-on-strip-method	BonfaceKilz
	Bug/Replace map on strip with a list comprehension that calls strip()
2020-10-28	Merge pull request #470 from zsloan/mapping_chr_view_fix	zsloan
	Fixed error when zooming into a chromosome when mapping
2020-10-28	A non-string being used as a paramter in HT.Link caused an error after the ↵	zsloan
	Python3 switchover, so I converted it to a string * wqflask/wqflask/marker_regression/display_mapping_results.py - cast theGO["snpCount"] as a string
2020-10-29	Replace map on strip with a list comprehension that calls strip()	BonfaceKilz
	* scripts/maintenance/readProbeSetSE_v7.py: In Python3 you can't map string.strip on a list of strings. Instead use a list comprehension and apply strip() on each element of the list. * wqflask/wqflask/marker_regression/plink_mapping.py: Ditto. * wqflask/wqflask/snp_browser/snp_browser.py: Ditto.
2020-10-28	Use latin-1 encoding when converting hmac secret to bytes	BonfaceKilz
	* wqflask/utility/hmac.py (hmac_creation): Use latin-1 when serializing the hmac secret. This ensures that the behaviour of verify_cookie remains the same as in the python2 tip.
2020-10-28	Add new test for hmac_creation with latin-1 secret	BonfaceKilz
	* wqflask/tests/utility/test_hmac.py (test_hmac_creation_with_cookie): New test. For this test, use a secret that behaves differently when encoded to either utf-8 or latin-1.
2020-10-28	Add tests for cookie verification	BonfaceKilz

2020-10-28	Merge pull request #468 from zsloan/export_fix	zsloan
	Fixed trait page export issue caused by Scroller
2020-10-28	Fixed trait page export to work with Scroller + added metadata for ↵	zsloan
	non-Phenotype traits and column headers * wqflask/wqflask/show_trait/export_trait_data.py - Added metadata for non-Phenotype traits and column headers (which didn't previously exist) * wqflask/wqflask/static/new/javascript/show_trait.js - Changed export_sample_table_data to use DataTables API instead of just selecting from the DOM with JQuery
2020-10-27	Cast ProbeSet description as binary to fix encoding issue on global search page	zsloan
	* wqflask/wqflask/gsearch.py - Cast ProbeSet description as binary