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2020-11-09mock logger in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-09add test for run_gemma function in marker_regression/gemma_mapping.pyAlexanderlacuna
2020-11-09refactor marker_regression/gemma-mapping.py run-gemma function to avoid Index...Alexanderlacuna
2020-11-08add tests for marker_regression/plink_mapping.pyAlexanderlacuna
2020-11-08add tests for marker_regression/gemma_mappingAlexanderlacuna
2020-11-08Change defaultline argument in the build_line_list from None to empty stringAlexanderlacuna
2020-11-06Removed the page selection from the top of the table because it created an aw...zsloan
2020-11-06Changed the show/hide column buttons to use DataTables API + a few other chan......- Fixed a couple column header glossary links to point to GN1 - Added trait_list.css for styling a couple elements common to similar pages (like correlations or view collection) zsloan
2020-11-06Added min-width for the divs containing the analysis tools and table options,......Also made some indentation more consistent zsloan
2020-11-06Added new css file for pages that have trait list tables (not sure what else ...zsloan
2020-11-06Increased the min-width for the show_trait page container div for all the acc...zsloan
2020-11-06After I changed some class names in the trait page to use - instead of _ (to ...zsloan
2020-11-06remove whitespaceAlexanderlacuna
2020-11-06modify natural_sort and return list to avoid having side effectAlexanderlacuna
2020-11-06modify tests to for changes in the natural sort functionAlexanderlacuna
2020-11-05Converted correlation table for ProbeSet target datasets to use the JSON inpu...zsloan
2020-11-05Added some additional necessary fields to generate_corr_json in show_corr_res...zsloan
2020-11-06fix typoAlexanderlacuna
2020-11-05Removed html from generate_corr_json since that will be done by the column de...zsloan
2020-11-05Imported Scroller and used it with correlation page tablezsloan
2020-11-05remove duplicatesAlexanderlacuna
2020-11-05add test for samplelist and show_traitAlexanderlacuna
2020-11-04Changed numeric-html sorting for the Tissue/Lit r columns to natural-minus-na......* wqflask/wqflask/templates/correlation_page.html - Replaced numeric-html sorting with natural-minus-na for the lit/tissue r columns zsloan
2020-11-04Use new glossary link from glossary_blueprint in html templatesBonfaceKilz
2020-11-04Add missing imageBonfaceKilz
2020-11-04Add link markers to elements which are referenced from elsewhereBonfaceKilz
2020-11-04Update test_markdown_routes...* wqflask/tests/unit/wqflask/test_markdown_routes.py (test_render_markdown_when_fetching_locally): Fix failing test. BonfaceKilz
2020-11-04Add an edit link button to glossary pageBonfaceKilz
2020-11-04Wrap rendered content in div containerBonfaceKilz
2020-11-04Update glossary markdown fileBonfaceKilz
2020-11-04Merge pull request #475 from Alexanderlacuna/test-showtrait...Add more tests for show trait moduleBonfaceKilz
2020-11-04correct a typoAlexanderlacuna
2020-11-04remove extra whitespaceAlexanderlacuna
2020-11-04remove whitespace in line 119-120Alexanderlacuna
2020-11-04remove whitespaceAlexanderlacuna
2020-11-04remove whitespace and assertIsAlexanderlacuna
2020-11-03Merge pull request #479 from zsloan/bug/haplotype_analyst_error_fix...Bug/haplotype analyst error fixzsloan
2020-11-03Changed the syntax for the "sort" function in the docstring of GeneralObject ......* wqflask/base/GeneralObject.py - edited docstring to be correct for Python 3 zsloan
2020-11-03Fixed a sort used when doing the haplotype analysis to be compatible with Pyt......* wqflask/wqflask/marker_regression/display_mapping_results.py - The arguments for sort are different in Python 3, so it was changed to be compatible zsloan
2020-11-03Fix false-positive tests...* wqflask/tests/unit/wqflask/test_markdown_routes.py: (MockRequests404): Pass self in all properties. (MockRequests200): Ditto. (test_render_markdown): Rename to test_render_markdown_when_fetching_locally. (test_render_markdown_when_fetching_remotely): New test. BonfaceKilz
2020-11-03Merge pull request #478 from zsloan/loading_page_n_fix...Joined sample names in primary_samples and all_samples with commas be…zsloan
2020-11-03Joined sample names in primary_samples and all_samples with commas because th......* wqflask/wqflask/show_trait/show_trait.py primary_samples and all_samples passed as hidden form inputs now have names split by commas so they can be counted correctly when displaying the N on the mapping loading screen zsloan
2020-11-03Delete file...* wqflask/tests/integration/test_glossary.py: Delete it. Earlier renamed to test_markdown_routes. BonfaceKilz
2020-11-03Add basic tests for rendering_markdown...* wqflask/tests/unit/wqflask/test_markdown_routes.py: New tests. BonfaceKilz
2020-11-03Add basic structure for "/glossary" routes testBonfaceKilz
2020-11-03Move logic for fetching md files to it's own function...* wqflask/wqflask/markdown_routes.py (render_markdown): New function. (glossary): use render_markdown function. BonfaceKilz
2020-11-03Add simple md content in glossary.mdBonfaceKilz
2020-11-03Update glossary template with markdown contentBonfaceKilz
2020-11-03Rename glossary.py to markdown_routes.py...Evary page with markdown content will have routes added in markdown_routes.py * markdown_routes.py: New file. * wqflask/wqflask/glossary.py: Delete it. * wqflask/wqflask/__init__.py: Update import. BonfaceKilz
2020-11-03Merge branch 'testing' of https://github.com/genenetwork/genenetwork2 into te...Alexanderlacuna
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