| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-08-26 | Fixed issue with colums for the gene global search (still need to change for ↵ | zsloan | |
| phenotype) Fixed issue where LRS and LOD are sometimes labeled incorrectly Changed the header of the trait page Added link to GN1 in header Fixxed an issue that made permutations not work with pylmm Fixed "sign in" button when creating a collection while not logged in | |||
| 2015-08-14 | Added csv download button to search result table; still need to add to other | zsloan | |
| tables and later attach its functionality to the existing Download Table button Fixed an issue where rows wouldn't uncheck with backspacing in Select Top text area; the last commit just fixed the highlighting, not the checkboxes Some changes in progress towards trying to fix the additive effect issue; the problem is that the lod_chart.js code writes each chromosome as one d3 path, so I can't change the color for individual segments within that path. I'll have to completely change the way the path is drawn for the additive effect | |||
| 2015-08-12 | Made Select Top function more intuitively and changed the text box length | zsloan | |
| 2015-08-12 | Fixed global and regular search so that resizing/reordering columns works ↵ | zsloan | |
| for all of them, among other minor changes | |||
| 2015-08-11 | Highlighting works for all trait selection options (select all, invert, ↵ | zsloan | |
| select top) Search table and Select Top options added to global and regular search pages | |||
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-08-06 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-08-04 | Fixed additive effect for lodchart | zsloan | |
| Made some more changes/improvements to various tables throughout the site | |||
| 2015-07-31 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-29 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-28 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan | |
| 2015-07-27 | Committing a few more changes to tables before pulling Lei's global search ↵ | zsloan | |
| updates | |||
| 2015-07-24 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-23 | Merge /home/zas1024/gene | Lei Yan | |
| 2015-07-23 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-23 | Committing most recent changes to tables so Lei can pull; still have a few ↵ | zsloan | |
| more issues to resolve, like setting initial column width | |||
| 2015-07-20 | Missed commenting out a line in collections/list | zsloan | |
| 2015-07-20 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-07-20 | Fixed the code that generates the dataset selection drop-down for correlations | zsloan | |
| Made changes to the tables of correlation results, collections, and search results: - Added resizeable columns to correlation results and collections, but not to search results because it seems that it requires Y scrolling to be set (I'll check if it makes sense to add scrolling to the search results) - Correlation results and collections are now in scrolling tables - The style is the same across all of these tables now Remaining issues: - It doesn't seem like I can set the column width when initializing dataTables in correlation results. I don't know why this is; it might be due to the table already being the size of a full page. I want to be able to default to some good widths, even if the user can resize them - I tried adding hoverForMore, but it doesn't seem to cooperate with datatable cells; I think this is due to having to put the text in a div. | |||
| 2015-07-17 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan | |
| 2015-07-16 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-15 | Fixed issue where chromosome view doesn't work on qtlreaper mapping results | zsloan | |
| 2015-07-15 | Fixed some of the javascript after pulling Lei's changes to the search table | zsloan | |
| 2015-07-15 | Small mistake during last merge; forgot to change if to elif in template | zsloan | |
| 2015-07-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| Conflicts: wqflask/wqflask/templates/search_result_page.html | |||
| 2015-07-15 | Cursor doesn't change when hovering over index column header now | zsloan | |
| 2015-07-15 | Committer: Lei Yan <lei@penguin.uthsc.edu> | Lei Yan | |
| On branch master | |||
| 2015-07-10 | Merge /home/lei/gene | zsloan | |
| 2015-07-10 | Fixed the genofile_parser.py script since some .geno files had been ↵ | zsloan | |
| incorrectly converted to json Fixed GO search to work with combined searches | |||
| 2015-07-10 | Merge https://github.com/genenetwork/genenetwork2 | Lei Yan | |
| 2015-07-10 | On branch master | Lei Yan | |
| 2015-07-10 | Added an OR ("Get Any") search to the index page | zsloan | |
| Fixed several issues with existing searches; for example, the user can type "Chr" before the chromosome parameter (for example LRS=(9 999 Chr2 100 105) ) | |||
| 2015-07-09 | Added a temporary fix to prevent .geno requiring mapping methods from ↵ | zsloan | |
| appearing for human groups | |||
| 2015-07-09 | Forgot to add one change to the last commit | zsloan | |
| 2015-07-09 | Mapping methods now check for existing genotype files. | zsloan | |
| Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory | |||
| 2015-07-09 | Some phenotype searches were throwing an error due to an assert statement in ↵ | zsloan | |
| trait.py. Since I couldn't find the purpose of the assert statement I removed it. | |||
| 2015-07-07 | Updated mirror/development sites and changed font color in form control emements | zsloan | |
| 2015-07-07 | Also added index column to collections | zsloan | |
| 2015-07-07 | Added index column and changed the way location is displayed for search results | zsloan | |
| 2015-07-06 | Forgot to add the search error page template | zsloan | |
| 2015-07-06 | An error page should be loaded if the user uses a nonexistent search term, ↵ | zsloan | |
| instead of getting an Internal Server Error | |||
| 2015-07-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-07-02 | Combined searches that didn't work previously should work now, including cis ↵ | zsloan | |
| and trans combined searches | |||
| 2015-07-02 | fix typos | Artem Tarasov | |
| 2015-07-02 | fix #80 | Artem Tarasov | |
| 2015-07-02 | use button for returning to full view | Artem Tarasov | |
| 2015-07-01 | Needed to add a couple parenthesis for transLRS searches | zsloan | |
| 2015-07-01 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-07-01 | cis and trans LRS searches now work. Still need to get them working in ↵ | zsloan | |
| combined searches | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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