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AgeCommit message (Expand)Author
2022-09-08Replace g.db with database_connection() context managerMunyoki Kilyungi
2022-09-08Delete unused news moduleMunyoki Kilyungi
2022-09-08Merge pull request #727 from Alexanderlacuna/feature/use-textfilesAlexander Kabui
2022-09-08fixup query formattingAlexander_Kabui
2022-09-07catch general errors this will recreate the fileAlexander_Kabui
2022-09-07use csv to parse filesAlexander_Kabui
2022-09-07filter list vals with indexAlexander_Kabui
2022-09-06Change collections/view forms' default action from /delete to /loading (becau...zsloan
2022-09-06Add data-trait-info to collections/view columnDefszsloan
2022-09-06Include trait_info_str in trait JSON, so it can be included in collection tab...zsloan
2022-09-06Fix mistake from generalize_tables mergezsloan
2022-09-06Fix error with dataset menu query in data_set.pyzsloan
2022-09-06Fix a few problems with ind_genofile conversion scriptzsloan
2022-09-06Merge branch 'testing' into feature/generalize_tableszsloan
2022-09-06Placeholder: Set trait location to ??? if the Mb is NULLFrederick Muriuki Muriithi
2022-09-06Refactor: Use joins for queriesFrederick Muriuki Muriithi
2022-09-06Set up the self.* variables from query resultsFrederick Muriuki Muriithi
2022-09-06Use dataset name if dataset group name is not set.Frederick Muriuki Muriithi
2022-09-05Fix failing mapping test by using get to fetch values from a dictMunyoki Kilyungi
2022-09-05Replace "assert" with ValueErrorMunyoki Kilyungi
2022-09-05Update values for "additive" in failing gemma testMunyoki Kilyungi
2022-09-01Remove unused string import.Arun Isaac
2022-09-01Allow connecting to SQL database without a password.Arun Isaac
2022-08-31Delete unused modulesMunyoki Kilyungi
2022-08-31Replace fetchall, fetchone, fetch1 with database_connectionMunyoki Kilyungi
2022-08-31Delete benchmark moduleMunyoki Kilyungi
2022-08-31Remove "with Bench ..." callsMunyoki Kilyungi
2022-08-31Remove usage of "logger" and un-necessary comments wrt the sameMunyoki Kilyungi
2022-08-31Remove unused "string" importMunyoki Kilyungi
2022-08-31Replace debug with error logs in Except block pre/post a sessionMunyoki Kilyungi
2022-08-31Add transform parameter to mapping api unit testzsloan
2022-08-31Change qnorm parameter to transform, so other transforms can be added laterzsloan
2022-08-31Add qnorm option to mapping apizsloan
2022-08-31Move normf function out of quantile_normalize_vals so it can be imported by m...zsloan
2022-08-31Fix failing api/test_mapping.py testzsloan
2022-08-31integrate text filesAlexander_Kabui
2022-08-31add new environment variable:TEXTDIRAlexander_Kabui
2022-08-31read and parse text filesAlexander_Kabui
2022-08-31Re-add read_from_pyfileMunyoki Kilyungi
2022-08-31add function to fetch probeset text filesAlexander_Kabui
2022-08-30Remove logging and unused imports from api/mapping.pyzsloan
2022-08-30Add genofile parameter to mapping API endpointzsloan
2022-08-30Close a database connection only onceMunyoki Kilyungi
2022-08-25Merge branch 'chores/gn2-queries-optimization' of github.com:Alexanderlacuna/...Frederick Muriuki Muriithi
2022-08-24Fix issue where literature correlations were always run against their own dat...zsloan
2022-08-24Limit literature correlation results to top N as specified in the formzsloan
2022-08-23Add support for database rollbacks if the db engine supports it.Munyoki Kilyungi
2022-08-23Delete unused function and imports.Munyoki Kilyungi
2022-08-23integrate code for fetching traits metadataAlexander_Kabui
2022-08-23function to fetch metadataAlexander_Kabui
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