Age | Commit message (Expand) | Author |
---|---|---|
2014-08-25 | Added permutations to pyLMM | Zachary Sloan |
2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master | Lei Yan |
2014-08-21 | Committer: Lei Yan <lei@penguin.uthsc.edu>...On branch master | Lei Yan |
2014-08-21 | Added the option to display mapping results as either an interval mapping...or manhattan plot Fixed a few minor bugs | Zachary Sloan |
2014-08-15 | Permutations now work with rqtl | Zachary Sloan |
2014-08-12 | Fixed the scrollable data tables for the show trait page...Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function | Zachary Sloan |
2014-08-04 | Fixed another minor issue with the heatmap where the original curve wouldn't ... | Zachary Sloan |
2014-08-04 | Fixed a problem with the heatmap after moving reorgLodData function to panelu......Got rqtl working with converted BXD genofile and also got composite mapping working | Zachary Sloan |
2014-07-25 | Got the heatmap/lodchart combo working...Started working on getting rqtl working as another mapping method | Zachary Sloan |
2014-07-21 | Fixed issue where sample values were ordered on the trait page | Zachary Sloan |
2014-07-21 | Heatmap is now working (using Karl's qtlcharts code), but still need...to figure out the issue with the color range | Zachary Sloan |
2014-07-21 | Merge /home/lei/gene | Zachary Sloan |
2014-07-18 | Forgot to add the heatmap __init__.py file in the last commit | Zachary Sloan |
2014-07-18 | Just did some more work on the heatmap | Zachary Sloan |
2014-07-18 | Merge /home/zas1024/gene...Conflicts: wqflask/base/data_set.py | Lei Yan |
2014-07-18 | Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap | Zachary Sloan |
2014-07-18 | Correlation table for phenotypes is working | Lei Yan |
2014-07-14 | Merge /home/zas1024/gene...Conflicts: wqflask/wqflask/static/new/javascript/dataset_select_menu.js wqflask/wqflask/templates/corr_scatter_plot_old.html | Lei Yan |
2014-07-14 | Made interval map zoom look better...Started creating probability plot for show trait page Added outlier detection message when user does mapping | Zachary Sloan |
2014-07-09 | Updated coffeescript, svg export working fine, interval mapping zoom working | Zachary Sloan |
2014-06-25 | Added Karl's correlation matrix code...Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait | Zachary Sloan |
2014-06-12 | Long overdue of commit to changes that add a scatter plot to the correlation ......and let you select a trait from your collection on the trait page and do a scatter plot against that triat as well. There are a number of accompanying js and css files written by Karl Broman that are needed for these features. The option to compare against more than just one trait still needs to be added for the trait page scatterplot function | Zachary Sloan |
2014-06-06 | Implimented Karl Broman's lodchart code for the interval mapping function....Suggestive/significant bars and additive effect curve added | Zachary Sloan |
2014-05-19 | Fixed sorting on the show trait page...Added/improved the x and y axis on the bar graph and histogram GEMMA working but still really slow | Zachary Sloan |
2014-05-05 | Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page | Zachary Sloan |
2014-03-26 | Got anonymous collections working correctly...Got results for the HSNIH and CANDLE marker regression pages (still some issues with the manhattan plot) | Zachary Sloan |
2014-03-05 | Improved load_genotypes.py...Committer: Lei Yan <lei@penguin.uthsc.edu> On branch master | Lei Yan |
2014-02-28 | Committing after creating AnonCollection class and before adding...remove trait function | Zachary Sloan |
2014-02-28 | Made some changes/comments to Lei's load_genotypes.py file | Zachary Sloan |
2014-02-28 | Made some changes to Lei's IO code for GN1 and GN2 genofiles | Lei Yan |
2014-02-27 | Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. | Zachary Sloan |
2014-02-26 | Collection page now displays for temp/anon collections, but...still needs the option to remove traits from them | Zachary Sloan |
2014-02-25 | Made some more progress towards getting anonymous collections working | Zachary Sloan |
2014-02-25 | Committing part-way through getting anonymous collections working | Zachary Sloan |
2014-02-25 | Merge /home/sam/gene | Zachary Sloan |
2014-02-25 | Added untracked file | Sam |
2014-02-25 | Just committing after messing with the marker regression plot | Zachary Sloan |
2014-02-24 | Chromosome zoom is working for the marker regression manhattan plot...and results show up correctly in the table again | Zachary Sloan |
2014-02-23 | On branch master | Lei Yan |
2014-02-23 | On branch master | Lei Yan |
2014-02-23 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-22 | On branch master | Lei Yan |
2014-02-21 | On branch master | Lei Yan |
2014-02-21 | On branch master | Lei Yan |