| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2015-05-23 | new probability plot (using NVD3 library) | Artem Tarasov | |
| * z scores are computed on the client side (using jStat library) * added Shapiro-Wilk test results | |||
| 2015-05-20 | revert database.py setup | Artem Tarasov | |
| 2015-05-20 | bar charts polished | Artem Tarasov | |
| * fixed bar chart width (two bars were invisible) * disabled basic stats update effects, if they are not visible * fix: unchecked samples were shown in charts (because attr('checked') was used instead of prop('checked')) * bar chart gets redrawn after checkbox changes * edit_data_change is also called when clicking buttons from the 'Block samples' panel * better bar chart transitions (use sample name as d3 key function) | |||
| 2015-05-20 | improved legend | Artem Tarasov | |
| Now the legend is always positioned on top, so that no overlapping with the plot occurs and it's always visible. The legend is now composed of spans, not an SVG anymore. Also increased the legend font size to 20px. | |||
| 2015-05-18 | fix attribute coloring | Artem Tarasov | |
| also I found out that there are two legends shown simultaneously, but one is suitable only for discrete values, and the other for continuous; now only the suitable one is shown | |||
| 2015-05-18 | Merge branch 'upstream' of github.com:lomereiter/genenetwork2 into issue28 | Artem Tarasov | |
| 2015-05-18 | fix broken trait page | Artem Tarasov | |
| 2015-05-15 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-05-15 | Position search now works for mRNA assay and genotype data sets | zsloan | |
| 2015-05-15 | reduce number of queries | Artem Tarasov | |
| 2015-05-15 | wip | Artem Tarasov | |
| 2015-05-13 | Fixed issue where you could change the Make Default button's text | zsloan | |
| 2015-05-13 | Fixed sorting on the trait page so that x values always appear at the bottom | zsloan | |
| 2015-05-13 | Improved sorting for columns with N/A or missing values | zsloan | |
| 2015-05-13 | Merge pull request #39 from pjotrp/master | zsloan | |
| Refactoring finding tools such as pylmm | |||
| 2015-05-13 | comment out sql query logging | Artem Tarasov | |
| 2015-05-13 | combine three similar queries into one | Artem Tarasov | |
| 2015-05-13 | replace multiple tissue queries with a single one | Artem Tarasov | |
| 2015-05-13 | cache datasets for each group | Artem Tarasov | |
| 2015-05-12 | Add info to warning | pjotrp | |
| 2015-05-12 | Remove app line | pjotrp | |
| 2015-05-12 | More elaborate handling of finding pylmm | Pjotr Prins | |
| 2015-05-12 | Move path search into tools.py | pjotrp | |
| 2015-05-12 | Resolved conflict before commit | zsloan | |
| 2015-05-12 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-05-12 | Just removed some code that wasn't being used | zsloan | |
| 2015-05-12 | Merge pull request #20 from lomereiter/issue11 | zsloan | |
| Fixes #11 (buttons on collection page) | |||
| 2015-05-12 | Fix #35 | Artem Tarasov | |
| * 'aliases' and 'location' are shown only where relevant * descriptions for phenotype datasets are provided at the top | |||
| 2015-05-11 | Show PYLMM_PATH on error | Pjotr Prins | |
| 2015-05-11 | Moved chunks | Pjotr Prins | |
| 2015-05-11 | More pylmm dependencies disabled | pjotrp | |
| 2015-05-11 | Remove outdated code | pjotrp | |
| 2015-05-11 | Moving pylmm out of the tree | pjotrp | |
| 2015-05-11 | pylmm has moved out of the GN2 source tree to ↵ | pjotrp | |
| https://github.com/genenetwork/pylmm_gn2 | |||
| 2015-05-11 | Fixed gen_select_dataset so that it does not include Phenotype and | zsloan | |
| Genotype groups when the corresponding data sets do not exist Interval Mapping no longer shows up for human traits Fixed the appearance of the mirror links on the main page | |||
| 2015-05-08 | Merge github.com:genenetwork/genenetwork2 | zsloan | |
| 2015-05-08 | Committing before pulling latest changes/fixes | zsloan | |
| 2015-05-08 | updating histogram on values' change (#28) | Artem Tarasov | |
| 2015-05-08 | fix histogram bin width | Artem Tarasov | |
| It was calculated wrongly when bins began from a non-zero value | |||
| 2015-05-08 | fix | Artem Tarasov | |
| 2015-05-08 | Fix #29 | Artem Tarasov | |
| The number of bins was set to 20 for all datasets. Changed the number to be sqrt(#samples) as suggested on Wikipedia. | |||
| 2015-05-07 | Excel export of trait data | Artem Tarasov | |
| 2015-05-07 | fix CSV export of trait data | Artem Tarasov | |
| 2015-05-07 | allow for attribute table to not exist | Artem Tarasov | |
| 2015-05-06 | fix spacing | Artem Tarasov | |
| 2015-05-06 | collection/view: bring buttons back | Artem Tarasov | |
| 2015-05-06 | email and pass validation | Artem Tarasov | |
| 2015-05-01 | Commented out imports of a few files that aren't used yet or stored in git | zsloan | |
| 2015-05-01 | Added Pjotr's latest pylmm changes | zsloan | |
| Added GEMMA and necessary plink-format genotype files in gemma directory Added the GEMMA genotype files to git LFS Removed some unnecessary/duplicated code from interval_mapping.py Separated GEMMA mapping code into its own file (will also do this for other methods) and fixed and issue that caused it to not run Added the table to the pair scan results page and wrote some code adding its attributes to each marker object, but it still isn't working yet | |||
| 2015-04-10 | Added git large file system (the .gitattributes files) and fixed an issue ↵ | zsloan | |
| where rat trait pages wouldn't work | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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