| Age | Commit message (Expand) | Author |
|---|
| 2023-01-30 | oauth2: split out code into separate modules...To ease development and maintenance, split the code into separate
modules, nesting the blueprints for a more modular feel.
| Frederick Muriuki Muriithi |
| 2023-01-28 | oauth2: List the user roles. View a particular role's details. | Frederick Muriuki Muriithi |
| 2023-01-26 | oauth2: UI: Rework user dashboard UI...Separate the roles, resources and group information from the overview
page.
| Frederick Muriuki Muriithi |
| 2023-01-24 | scripts: Provide help info for script. | Frederick Muriuki Muriithi |
| 2023-01-24 | correlations: Escape strings for html...Improves upon commit 63aff5ca22cfb5caaa38ac1d737afa48fc8dbf02
| Frederick Muriuki Muriithi |
| 2023-01-23 | oauth2: create group...Enable creation of a new group.
| Frederick Muriuki Muriithi |
| 2023-01-23 | oauth2: Retain email input, and "next uri" on error...Retain the "next uri" and the email the user had input in the case of
an error, so that the user has the chance to correct their input, and
still get to the uri they originally intended to (on success).
| Frederick Muriuki Muriithi |
| 2023-01-21 | oauth2: Cleanup fetching of roles and groups. Update template. | Frederick Muriuki Muriithi |
| 2023-01-20 | oauth2: Add user-profile template and dummy endpoints...* wqflask/wqflask/oauth2/routes.py: add some dummy endpoints to be
fleshed out
* wqflask/wqflask/templates/oauth2/view-user.html: Add missing
template for the /user-profile endpoint
| Frederick Muriuki Muriithi |
| 2023-01-20 | oauth2: Revoke token on logout...If a user logs out of the session, and their token is not revoked, if
their token were to leak somehow, then an attacker could use it before
it expired.
Explicit revocation of the token helps avoid that.
| Frederick Muriuki Muriithi |
| 2023-01-19 | Replace angle brackets in trait descriptions for correlation results, since p... | zsloan |
| 2023-01-19 | oauth2: Implement user registration. | Frederick Muriuki Muriithi |
| 2023-01-19 | Feature/toggle switch caching (#762)...* add optional use cache checkbox
* add check for use_cache | Alexander Kabui |
| 2023-01-12 | Add BXD-NIA-AD to list of BXD_GROUP_EXCEPTIONS (so the correct options show u... | zsloan |
| 2023-01-12 | Revert "bug: use stderr in case of job errors"...This reverts commit 4666392bbc34e693f21895ccb62abb816ff95874.
| Frederick Muriuki Muriithi |
| 2023-01-12 | mechanical-rob: use new file(s) for correlation correctness...* test/requests/correlation_results_text_files/BXD_10710_vs_BXDPublish.csv
new sample file for testing.
* test/requests/correlation_tests.py: update test code to use new
sample files
* wqflask/wqflask/correlation/show_corr_results.py: Fix minor issues
exposed by tests.
| Frederick Muriuki Muriithi |
| 2023-01-12 | bug: use stderr in case of job errors | Frederick Muriuki Muriithi |
| 2023-01-09 | Add Show/Hide Columns to collections/view | zsloan |
| 2023-01-09 | Add back option to search on trait page table...This was mistakenly removed when the table code was refactored a while back
| zsloan |
| 2023-01-05 | Turn on homology track by default | zsloan |
| 2023-01-04 | auth: Add `/user-profile` endpoint...Display some details for the currently logged in user at the
`/user-profile` endpoint.
| Frederick Muriuki Muriithi |
| 2022-12-29 | auth: Redirect on login and cleanup...* wqflask/wqflask/oauth2/routes.py: remove unused imports. Add
placeholder endpoint "/register-client"
* wqflask/wqflask/templates/oauth2/login.html: enable redirect to
specific endpoints
| Frederick Muriuki Muriithi |
| 2022-12-29 | auth: Provide decorator to limit access to routes...Define the new `oauth2_required` decorator that checks for the
existence and validity of a token before allowing access to the given
endpoint.
Move the `user_logged_in` check to the `checks.py` module.
* wqflask/wqflask/oauth2/checks.py: new file
* wqflask/wqflask/oauth2/routes.py: import new decorator
| Frederick Muriuki Muriithi |
| 2022-12-29 | Implement "login" via OAuth2 | Frederick Muriuki Muriithi |
| 2022-12-23 | Remove try/except around mapping, because it makes it hard to see proper erro... | zsloan |
| 2022-12-23 | No tracking: remove revolvermaps | Pjotr Prins |
| 2022-12-21 | Remove unnecessary if statement from drawHomologyBand | zsloan |
| 2022-12-21 | Fix logic for filtering homology data | zsloan |
| 2022-12-21 | Make homology track display directional arrows based on query strand | zsloan |
| 2022-12-21 | Fix homology source file path...Fix syntax error in multiline if statement
| zsloan |
| 2022-12-21 | Replace a couple other instances of hg38 with query | zsloan |
| 2022-12-21 | Substitute mm10/hg38 with ref/source in display_mapping_results.py | zsloan |
| 2022-12-21 | Change homology logic to include lines that start/end outside of the...given mb range
This is to avoid a situation where a user zooms in and a bar should
encompass the whole area but isn't displayed (because its start/end
don't both fall within the given Mb range)
This commit also renames mm10/hg38 to ref/query to be more generic
| zsloan |
| 2022-12-21 | Replace hard-coded homology source file...Remove limitation on when to show homology track
| zsloan |
| 2022-12-21 | Add code drawing homology band in mapping figure | zsloan |
| 2022-12-21 | Add showHomology parameter to mapping endpoint | zsloan |
| 2022-12-21 | Add code loading contents of homology file for given mb range...Currently this hard-codes the source file. Not sure how we want to store
this data yet so just using a CSV file for now.
| zsloan |
| 2022-12-21 | Add homology band option to run_mapping.py | zsloan |
| 2022-12-21 | Add homology band options to mapping template | zsloan |
| 2022-12-15 | Add BXD-NIA-AD to list of BXD-equivalent groups in display_mapping_results.py | zsloan |
| 2022-12-15 | Fix bug where changing a resource owner throws an error due to users without ... | zsloan |
| 2022-12-15 | Change if blocks in template to allow changing owner when an owner isn't curr... | zsloan |
| 2022-12-14 | Add description to REST API /traits output for phenotypes | zsloan |
| 2022-12-13 | Change default text_dir to TEXTDIR, since that points to the GN1 ProbeSet_Dat... | zsloan |
| 2022-12-13 | add check for file in web/ProbeSetFreeze_DataMatrix folder (#758) | Alexander Kabui |
| 2022-12-12 | Change logic in compute_correlation_rust so that it doesn't re-run the top 50... | zsloan |
| 2022-12-06 | Use a dataset's name to fetch it's metadata...* wqflask/wqflask/views.py (show_trait_page): Use a dataset's name -
from the query parameters - to fetch metadata.
| Munyoki Kilyungi |
| 2022-12-05 | Put metadata fetching for show_trait_page in try/except to get it working again | zsloan |
| 2022-12-05 | scripts: add GN2 results parsing to parser script...* wqflask/scripts/parse_corr_gn1_results_to_csv.py: Rename script
* wqflask/scripts/parse_corr_html_results_to_csv.py:
* Use argparse to parse CLI arguments
* Add parsing for GN2 results
| Frederick Muriuki Muriithi |
| 2022-12-03 | jobs: Add debug UI...* wqflask/scripts/run_external.py: Save the actual return code
* wqflask/wqflask/__init__.py: Use new jobs blueprint
* wqflask/wqflask/api/jobs.py: Add new jobs debug route
* wqflask/wqflask/templates/jobs/debug.html: new template for when job
is found
* wqflask/wqflask/templates/jobs/no-such-job.html: new template for
when the job is not found
| Frederick Muriuki Muriithi |
