| Age | Commit message (Expand) | Author |
|---|
| 2022-09-19 | Check for file size before attempting parsing...Empty files lead to json encoding errors; this commit checks whether
the file is empty before attempting to parse the file.
| Frederick Muriuki Muriithi |
| 2022-09-19 | Display correct error for missing file/directory...Provide the user with the missing file/directory in the error message
to make debugging easier.
| Frederick Muriuki Muriithi |
| 2022-09-19 | Refactor: raise appropriate error...If a file/directory does not exist, raise the builtin
`FileNotFoundError` rather than the generic `Exception`.
| Frederick Muriuki Muriithi |
| 2022-09-16 | Add example code to docstring of MonadicDictCursor....* wqflask/utility/monads.py (MonadicDictCursor): Add example code to
docstring.
| Arun Isaac |
| 2022-09-16 | Add example code to docstring of MonadicDict....* wqflask/utility/monads.py (MonadicDict): Add example code to
docstring.
| Arun Isaac |
| 2022-09-16 | Initialize empty MonadicDict by default....* wqflask/utility/monads.py (MonadicDict)[__init__]: Set default
dictionary argument to the empty dictionary.
| Arun Isaac |
| 2022-09-14 | Add monadic utilities MonadicDict and MonadicDictCursor....* wqflask/utility/monads.py: New file.
| Arun Isaac |
| 2022-09-12 | Add glyphicon for trait page Download table | zsloan |
| 2022-09-12 | Add glyphicons for sample table Export/Reset buttons | zsloan |
| 2022-09-12 | Add glyphicon for GEMMA compute button | zsloan |
| 2022-09-12 | Add glyphicons to Export/Reset buttons in Transform and Filter form | zsloan |
| 2022-09-12 | Move global search button and add glyphicon | zsloan |
| 2022-09-12 | Add search glyphicons + index_page.css for the Info button styling | zsloan |
| 2022-09-12 | Set Species drop-down to same width as Group/Type dropdowns | zsloan |
| 2022-09-13 | Increase table marker limit to 25000 | zsloan |
| 2022-09-13 | Fix bug where passing LOCO into the mapping API endpoint didn't work | zsloan |
| 2022-09-12 | Fix query: Add comma to separate columns. | Frederick Muriuki Muriithi |
| 2022-09-12 | Check for species before calling `lower()` | Frederick Muriuki Muriithi |
| 2022-09-12 | Check there is target data before running correlations | Frederick Muriuki Muriithi |
| 2022-09-12 | Fix query: Remove extraneous bracket | Frederick Muriuki Muriithi |
| 2022-09-12 | Check for traits before computing | Frederick Muriuki Muriithi |
| 2022-09-12 | Fix query: remove wrongly-placed comma | Frederick Muriuki Muriithi |
| 2022-09-12 | Check db resultset before indexing into it...The assumption that the resultset will never be empty was leading to a
lot of errors.
| Frederick Muriuki Muriithi |
| 2022-09-12 | Check data is truthy before indexing into it. | Frederick Muriuki Muriithi |
| 2022-09-09 | Fix bug in display_mapping_results chromosome query...A tuple of chromosome names was being passed into the query as a single
argument, while it expected a separate argument for each chromosome
| zsloan |
| 2022-09-09 | Fix bug in retrieve_other_names...After a recent change, it always tries to unpack 6 values from the
query, but it should only be unpacking 4 values if not type ProbeSet (so
it was throwing an error for anything not ProbeSet)
| zsloan |
| 2022-09-09 | handle cases where tissue dataset vals are empty list | Alexander_Kabui |
| 2022-09-09 | tissue:fetch for query formatting | Alexander_Kabui |
| 2022-09-09 | Fix query: remove string interpolation. | Frederick Muriuki Muriithi |
| 2022-09-09 | Retain only a single import of the same module | Frederick Muriuki Muriithi |
| 2022-09-09 | Merge pull request #732 from BonfaceKilz/bug/fix-broken-correlations...Bug/fix broken correlations | Muriithi Frederick Muriuki |
| 2022-09-09 | Fetch sample values correctly...* wqflask/base/data_set.py (MrnaAssayDataSet.retrieve_sample_data):
Fix indentation.
| Munyoki Kilyungi |
| 2022-09-09 | Add missing import...* wqflask/base/trait.py: Import utility.hmac
| Munyoki Kilyungi |
| 2022-09-09 | Import missing module. | Frederick Muriuki Muriithi |
| 2022-09-09 | Check whether trait_list and sample_data exist before operations | Frederick Muriuki Muriithi |
| 2022-09-09 | Remove `None` values from dataset | Frederick Muriuki Muriithi |
| 2022-09-09 | Filter out Samples without values | Frederick Muriuki Muriithi |
| 2022-09-09 | Refactor: Add tests and handle edge case...Remove mutation of state, and handle the edge case where the
sub-sequence could be an empty sequence.
| Frederick Muriuki Muriithi |
| 2022-09-09 | Use `database_connection()`...Call the `database_connection()` function to get a connection to the
database.
| Frederick Muriuki Muriithi |
| 2022-09-09 | Replace `g.db.execute` with `cursor.execute` | Frederick Muriuki Muriithi |
| 2022-09-09 | Comment out pickling to avoid error...Pickling was failing with
"TypeError: cannot pickle 'Connection' object"
This commit avoids the error by temporarily commenting out the line to
prevent the pickling to actually test the working of the system on
the CI/CD server.
| Frederick Muriuki Muriithi |
| 2022-09-09 | If port is null, use MySQL's default 3306 | Frederick Muriuki Muriithi |
| 2022-09-09 | Use `urllib.parse.urljoin` for urls...Use the `urllib.parse.urljoin` function to join urls rather than
string concatenation for uniformity.
| Frederick Muriuki Muriithi |
| 2022-09-08 | Filter export by checked rows (when any rows are checked) | zsloan |
| 2022-09-08 | Fix getCheckedRows so that it only selects checkbox input elements | zsloan |
| 2022-09-08 | Convert variables to camelCase and remove some unused variables | zsloan |
| 2022-09-08 | Remove commented out code | zsloan |
| 2022-09-08 | Remove console log | zsloan |
| 2022-09-08 | Remove some unused initialized variables | zsloan |
| 2022-09-08 | Make GN_SERVER_URL the genenetwork3 API endpoint....From now on, GN_SERVER_URL will be the genenetwork3 API endpoint. For
example, GN_SERVER_URL=https://gn3.genenetwork.org/api
* wqflask/wqflask/collect.py (view_collection),
wqflask/wqflask/partial_correlations_views.py (partial_correlations,
poll_partial_correlation_results),
wqflask/wqflask/static/new/javascript/dataset_select_menu_orig.js (defaultStatusCodeFunctions):
Do not append api to GN_SERVER_URL.
* etc/default_settings.py (GN_SERVER_URL): Append /api.
| Arun Isaac |
