| Age | Commit message (Expand) | Author |
|---|
| 2022-08-23 | Add support for database rollbacks if the db engine supports it....* wqflask/wqflask/database.py: Import contextlib.
(database_connection): Refactor to support roll-backs.
| Munyoki Kilyungi |
| 2022-08-23 | Delete unused function and imports....* wqflask/wqflask/database.py: Remove unused sqlalchemy imports.
(read_from_pyfile): Delete it.
| Munyoki Kilyungi |
| 2022-08-20 | Divide GEMMA additive effect by 2 | zsloan |
| 2022-08-20 | Fix JS for opening new tabs (or not) for collection page tools/options | zsloan |
| 2022-08-17 | Use context managers for database cursors | Frederick Muriuki Muriithi |
| 2022-08-17 | Merge branch 'chores/rust-enhancements' of github.com:Alexanderlacuna/genenet... | Frederick Muriuki Muriithi |
| 2022-08-16 | Merge dicts into single result | Frederick Muriuki Muriithi |
| 2022-08-16 | Convert list items to single dict | Frederick Muriuki Muriithi |
| 2022-08-16 | rename boolean variables | Alexander_Kabui |
| 2022-08-16 | linter fixes | Alexander_Kabui |
| 2022-08-16 | enable compute all for test | Alexander_Kabui |
| 2022-08-16 | index error fix | Alexander_Kabui |
| 2022-08-16 | remove flask g object | Alexander_Kabui |
| 2022-08-16 | minor fixes for computing all correlations | Alexander_Kabui |
| 2022-08-15 | add default values for num overlap,corr_coeff | Alexander_Kabui |
| 2022-08-14 | init:perform top n sample for probes | Alexander_Kabui |
| 2022-08-12 | Revert "Check for keys before using them."...This reverts commit a1cbc12f843bbdc1759d5acac5ae3630fb5d4b81.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Add a profiling script...Add a script to enable profiling the code.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Fix some issues with the tests. Add notes in code for improvements. | Frederick Muriuki Muriithi |
| 2022-08-12 | Refactor: separate the three correlation types...Refactor the code such that each correlation type (sample, tissue,
literature) is computed in its own function. This makes the code
clearer, and helps reduce repetition.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Check for keys before using them. | Frederick Muriuki Muriithi |
| 2022-08-12 | Update format to prevent tissue correlation from failing...Update the data format of returned values so that it conforms with
expectatitions.
| Frederick Muriuki Muriithi |
| 2022-08-12 | Fix formatting for legibility | Frederick Muriuki Muriithi |
| 2022-08-12 | code to merge results;minor fixes | Alexander_Kabui |
| 2022-08-12 | compute top n tissue results | Alexander_Kabui |
| 2022-08-12 | add code to compute top n tissue results | Alexander_Kabui |
| 2022-08-12 | Fix minor bug. | Frederick Muriuki Muriithi |
| 2022-08-12 | Integrate rust correlations. Deduplicate similar code....- Use rust correlations rather than the slower python one
- Remove code duplicated in the
`wqflask/wqflask/correlation/rust_correlation.py` module within the
`compute_correlation_rust` function.
| Frederick Muriuki Muriithi |
| 2022-08-11 | Add data-trait-info attribute to checkboxes on search results page...Currently there's a separate trait_info_str function in
search_results.py, because search_results.py doesn't build the trait
objects (so it can't use the one in collect.py unless I change that to
accept traits as either a GeneralTrait class or dict - which might be
better, I'm not sure)
| zsloan |
| 2022-08-09 | Display the probeset name in the editing form...* wqflask/wqflask/templates/edit_probeset.html: Add probeset.name to
the h1 tag.
| Munyoki Kilyungi |
| 2022-08-09 | Make edit_probeset.html similar to corresponding phenotype page...* wqflask/wqflask/templates/edit_probeset.html: Remove "reset" button.
Make button green. Move form element into the "container" div. Add
"container" class to form. Left justify labels, and the button.
Remove ":" from labels.
| Munyoki Kilyungi |
| 2022-08-09 | Delete "diff" section...For both the edit phenotype and probeset pages, the diffs can be
viewed from history.html.
* wqflask/wqflask/templates/edit_phenotype.html: Delete "diffs"
section.
* wqflask/wqflask/templates/edit_probeset.html: Ditto.
| Munyoki Kilyungi |
| 2022-08-09 | Remove "diff" logic from edit_probeset...* wqflask/wqflask/metadata_edits.py (edit_probeset): Delete logic for
fetching diff. Move that...
(show_history): ... here
* wqflask/wqflask/templates/edit_probeset.html: Update template to
show diffs in a history.html. Reposition and rename the h1 tag of
this page.
| Munyoki Kilyungi |
| 2022-08-09 | Update h1 title of history page...ATM, we don't show the name of the phenotype whose history we are
changing. That may be updated in a future commit.
* wqflask/wqflask/templates/edit_history.html: Reword h1 and remove
"{{}}" which results in a jinja error.
| Munyoki Kilyungi |
| 2022-08-09 | Fix circular import issue | Frederick Muriuki Muriithi |
| 2022-08-09 | Integrate rust correlation for "sample" correlation selection...Integrate the use of the rust code to compute the correlations for the
"sample" correlation selection.
| Frederick Muriuki Muriithi |
| 2022-08-09 | Pass trait values (X) as list not string...The trait values (X values) are converted to JSON within the
`run_correlation` call. Since JSON has the ability to represent lists
of objects, there is no point for the added conversion to and from
strings.
| Frederick Muriuki Muriithi |
| 2022-08-08 | remove unnessary append to list | Alexander_Kabui |
| 2022-08-08 | remove test;test is redundant | Alexander_Kabui |
| 2022-08-08 | tests refactoring | Alexander_Kabui |
| 2022-08-05 | Include partial_correlations.js in the search page template | zsloan |
| 2022-08-01 | Remove console logs from scatterplot.js | zsloan |
| 2022-08-01 | Change Make Default button to Save Settings | zsloan |
| 2022-08-01 | Add date/time to trait page export | zsloan |
| 2022-08-01 | Add header/description to partial correlation page | zsloan |
| 2022-08-01 | Add index column and phenotype group code to trait export | zsloan |
| 2022-07-28 | Use external process to compute sample correlations | Frederick Muriuki Muriithi |
| 2022-07-27 | Disable PCA when fewer than 3 traits | zsloan |
| 2022-07-27 | Change some text/formatting on Correlation Matrix page | zsloan |
| 2022-07-27 | Change capitalization on index page | zsloan |
