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AgeCommit message (Expand)Author
2022-09-29Remove empty rows, and conversion for outputFrederick Muriuki Muriithi
2022-09-28Do not assume transactions in database connections.Arun Isaac
2022-09-27Fix indentation in get_species_list for-loopzsloan
2022-09-27Unit Test: Fix unit test for Chromosome functions.Frederick Muriuki Muriithi
2022-09-26Add REST API endpoint for viewing a group's genotype file metadatazsloan
2022-09-26Get heatmap and mapping working again with changing to species.pyzsloan
2022-09-26Remove unused database_connection import from species.pyzsloan
2022-09-26Implement global search using xapian.Arun Isaac
2022-09-26Add indexing script for global search.Arun Isaac
2022-09-26Add xapian database connection utilities.Arun Isaac
2022-09-26Generalize sql_uri function to get any setting.Arun Isaac
2022-09-25Fix issue where the display name was used in the hmac for phenotype traitszsloan
2022-09-23Remove click handler on global search.Arun Isaac
2022-09-22Fix bug in GeneUtil.py query where extra quotes caused an errorzsloan
2022-09-22Use passed in cursor instead of initialising a new cursor.Frederick Muriuki Muriithi
2022-09-22Provide database cursor as argument for TheSpecies and ChromosomesFrederick Muriuki Muriithi
2022-09-22Update tests: pass in missing arguments.Frederick Muriuki Muriithi
2022-09-21Added Markers/HumanMarkers import to datasetgroup.py and removed it fromzsloan
2022-09-21Refactor: pass redis and db connections as argumentFrederick Muriuki Muriithi
2022-09-20Make -logP columns uniformzsloan
2022-09-20Make -logP columns uniformzsloan
2022-09-20Re-add collect import to views.pyzsloan
2022-09-20Make Search and Global Search Max -logP columns uniformzsloan
2022-09-20Fix gsearch ProbeSet queryzsloan
2022-09-20Remove global `Dataset_Getter` variableFrederick Muriuki Muriithi
2022-09-20Revert "Use member variable `self.conn` to avoid test failure"Frederick Muriuki Muriithi
2022-09-20Use member variable `self.conn` to avoid test failureFrederick Muriuki Muriithi
2022-09-20integrate use of text filesAlexander_Kabui
2022-09-20store text files in TMPDIRAlexander_Kabui
2022-09-20write probeset datasets to text filesAlexander_Kabui
2022-09-20Decompose file into separate modulesrefactor-data_set_py-20220920Frederick Muriuki Muriithi
2022-09-19Remove commented-out htmlzsloan
2022-09-19Provide fixtures for test. Fix error to pass test.Frederick Muriuki Muriithi
2022-09-19Remove "wrong" assertionsFrederick Muriuki Muriithi
2022-09-19Check paths before running gemma commandFrederick Muriuki Muriithi
2022-09-19Improve error reporting for no mapping resultsFrederick Muriuki Muriithi
2022-09-19Check for file size before attempting parsingFrederick Muriuki Muriithi
2022-09-19Display correct error for missing file/directoryFrederick Muriuki Muriithi
2022-09-19Refactor: raise appropriate errorFrederick Muriuki Muriithi
2022-09-16Add example code to docstring of MonadicDictCursor.Arun Isaac
2022-09-16Add example code to docstring of MonadicDict.Arun Isaac
2022-09-16Initialize empty MonadicDict by default.Arun Isaac
2022-09-14Add monadic utilities MonadicDict and MonadicDictCursor.Arun Isaac
2022-09-12Add glyphicon for trait page Download tablezsloan
2022-09-12Add glyphicons for sample table Export/Reset buttonszsloan
2022-09-12Add glyphicon for GEMMA compute buttonzsloan
2022-09-12Add glyphicons to Export/Reset buttons in Transform and Filter formzsloan
2022-09-12Move global search button and add glyphiconzsloan
2022-09-12Add search glyphicons + index_page.css for the Info button stylingzsloan
2022-09-12Set Species drop-down to same width as Group/Type dropdownszsloan