| Age | Commit message (Expand) | Author |
|---|
| 2021-10-09 | add function to process image data | Alexander Kabui |
| 2021-10-09 | unittest for processing wgcna output | Alexander Kabui |
| 2021-10-09 | add function to process gn3 wgcna output | Alexander Kabui |
| 2021-10-08 | Fixed some issues with scale and score_type in mapping export + include mappi... | zsloan |
| 2021-10-08 | Fix issue where outliers weren't being highlighted for rows drawn by Scroller... | zsloan |
| 2021-10-06 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into clustered_... | Frederick Muriuki Muriithi |
| 2021-10-06 | display images | Alexander Kabui |
| 2021-10-06 | Enable selection of heatmap orientation...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/non-clustered-heatmaps-and-flipping.gmi
* Provide the user with the UI elements to enable them select the
orientation of the heatmap that will be produced.
| Frederick Muriuki Muriithi |
| 2021-10-06 | tests: test_run_mapping: Add missing "name" attribute to tests | BonfaceKilz |
| 2021-10-06 | tests: test_run_mapping: Add missing calls...After adding the missing attribute to "self.trait", we need to also
need to update some missing calls.
| BonfaceKilz |
| 2021-10-06 | tests: test_run_mapping: Fix failing assert when getting perm strata | BonfaceKilz |
| 2021-10-06 | tests: test_run_mapping: Add missing attribute to "self.trait" | BonfaceKilz |
| 2021-10-06 | tests: test_run_mapping: Add missing positional argument "vals_hash" | BonfaceKilz |
| 2021-10-06 | add datatable for eigengenes | Alexander Kabui |
| 2021-10-05 | Merge branch 'testing' into feature/add_resizeable_columns | zsloan |
| 2021-10-05 | code format for wgcna results file | Alexander Kabui |
| 2021-10-05 | js formatting | Alexander Kabui |
| 2021-10-05 | move xterm code to setup | Alexander Kabui |
| 2021-10-05 | work on wgcna_setup form | Alexander Kabui |
| 2021-10-04 | Changed get_user_groups to pull both the ID and details in the for loop from ... | zsloan |
| 2021-10-04 | Add group link for user member groups | zsloan |
| 2021-10-04 | wqflask: resource_manager: Remove logger | BonfaceKilz |
| 2021-10-04 | Remove "_scripts.html" and all it's references | BonfaceKilz |
| 2021-10-04 | new_security: login_user.html: Delete commented out block | BonfaceKilz |
| 2021-10-04 | Replace hard-coded e-mails with gn-proxy queries...* wqflask/wqflask/decorators.py (edit_access_required.wrap): Query the
proxy to see the access rights of a given user.
| BonfaceKilz |
| 2021-10-04 | Rename "admin_login_required" to "edit_access_required" | BonfaceKilz |
| 2021-10-01 | add xterm web terminal | Alexander Kabui |
| 2021-09-29 | test template for gn3 wgcna | Alexander Kabui |
| 2021-09-27 | Apply pep-8 formatting | BonfaceKilz |
| 2021-09-27 | Remove variable-- named after a python keyword-- called "list" | BonfaceKilz |
| 2021-09-27 | Remove lengthy stack trace for 404, 400, 408 status codes...The stack trace causes the log file to grow into unmanageable sizes
over time.
| BonfaceKilz |
| 2021-09-25 | Add progress indicator. Handle errors....Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Add a progress indicator to show the user that there is some
progress happening, so that they can wait.
Add a function to handle any errors that arise.
| Frederick Muriuki Muriithi |
| 2021-09-25 | Remove hard-coded URL; use configured URL...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* etc/default_settings.py: remove duplicate configuration variable
* wqflask/wqflask/collect.py: use the configured url for the API
server
Use the configured URL rather that the hard-coded URL that was used
for testing out the clustered heatmap generation.
| Frederick Muriuki Muriithi |
| 2021-09-23 | Clear any existing image on subsequent clicks...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* If the user clicks on the "Clustered Heatmap" button, the system
should remove any previously existing clustered heatmap image and
replace it with the new image.
| Frederick Muriuki Muriithi |
| 2021-09-23 | Move the heatmap display area to before the table...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Move the heatmap area to before the data table, so that once the
heatmap is generated, it shows up before the table, and the user is
able to see what happened.
| Frederick Muriuki Muriithi |
| 2021-09-22 | Removed the Control for (marker) option from R/qtl for now since Danny mentio... | zsloan |
| 2021-09-22 | Fixed issue where the control marker parameter was being passed incorrectly t... | zsloan |
| 2021-09-22 | Only show most search page options if results exist; otherwise provide a link... | zsloan |
| 2021-09-22 | Added type='button' to the Delete Collection button within collections/view, ... | zsloan |
| 2021-09-22 | Remove references to reaper_version and code for running old qtlreaper | zsloan |
| 2021-09-22 | Cleanup code...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Remove unnecessary console.log(...) statements that were used in
development
* Re-arrange the html elements
* Rename element id
| Frederick Muriuki Muriithi |
| 2021-09-22 | Test heatmap creation from serialized figure...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Attempt using the figure, serialized as JSON, to display the
clustered heatmap.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Returned the GN1 url to gn1.genenetwork.org since it's apparently working wel... | zsloan |
| 2021-09-20 | Removed the reaper_version selection option, since original qtlreaper is no l... | zsloan |
| 2021-09-20 | Added back the option to edit privileges on trait pages, since the metadata e... | zsloan |
| 2021-09-20 | Prevent the default submit action...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Prevent the default submit action.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Fix id used. | Frederick Muriuki Muriithi |
| 2021-09-20 | Move "Clustered Heatmap" button to separate form...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Move the button out of the "export_form" into a new "heatmaps_form"
to avoid some weird JS interaction that showed up.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Implement proof-of-concept code to submit data...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* Implement some javascript to activate the "Clustered Heatmap"
button.
This commit provides a proof-of-concept implementation to help with
identifying the requirements for sending and receiving of the
heatmaps data.
| Frederick Muriuki Muriithi |
| 2021-09-20 | Provide UI elements for clustered heatmap generation...Issue:
https://github.com/genenetwork/gn-gemtext-threads/blob/main/topics/gn1-migration-to-gn2/clustering.gmi
* wqflask/wqflask/collect.py: provide hard-coded URL for testing
* wqflask/wqflask/templates/collections/view.html: provide button
Provide a button to trigger the heatmap generation. As a test, we
also provide a hard-coded URL for the API endpoint to get the
heatmap data.
| Frederick Muriuki Muriithi |
