| Age | Commit message (Expand) | Author |
|---|---|---|
| 2013-01-11 | Commented out import of rpy2 in correlationFunction.py due to...problem with rpy2 | Zachary Sloan |
| 2013-01-11 | Upgraded packages requirements.txt but haven't tested | Zachary Sloan |
| 2013-01-11 | Overwrote requirements.txt | Zachary Sloan |
| 2013-01-11 | Trimmed a bunch of code off of marker_regression.py | Zachary Sloan |
| 2013-01-10 | Checking in before we try to write our own code for the manhattan...plot figure` | Zachary Sloan |
| 2013-01-10 | Checking in before trying to put manhattan plot sections closer together | Zachary Sloan |
| 2013-01-10 | Normalized the y axis for each manhattan plot section | Zachary Sloan |
| 2013-01-10 | The plots now correctly appear above/below each other....Committing before trying to combine all the manhattan plot segments | Zachary Sloan |
| 2013-01-10 | Edited marker_regression.coffee to make every sub-manhattan plot...for each chromosome display Created css file for the marker_regression page Currently has display issue where the permutation histogram is overlapping with the manhattan plot | Zachary Sloan |
| 2013-01-10 | Made Chromosome class in marker_regression.coffee; current...it writes each chromosome's manhattan plot on top of each other. This commit is before trying to fix that. | Zachary Sloan |
| 2013-01-10 | Made x-axis values into ints; committing before trying to add multiple graphs...for each chromosome | Zachary Sloan |
| 2013-01-10 | Worked with the manhattan plot coffeescript to set x-axis and change...the plot point sizes and remove lines | Zachary Sloan |
| 2013-01-09 | Manhattan plot results are appearing correctly for chromosome 1 | Zachary Sloan |
| 2013-01-09 | The histogram coffeescript is now in its own class and the graph...still displays correctly | Zachary Sloan |
| 2013-01-09 | Checking in before putting the histogram coffeescript into its own...class | Zachary Sloan |
| 2013-01-09 | More or less finished the permutation histogram | Zachary Sloan |
| 2013-01-09 | Got the permutation plot working as a line plot; still need to make...it into a bar graph, though | Zachary Sloan |
| 2013-01-09 | jqplot added | Zachary Sloan |
| 2013-01-09 | Got the marker regression page to display again...Passed lrs_array values as js_data for the permutation histogram | Zachary Sloan |
| 2013-01-08 | js_data is being printed out (seemingly) correctly now for the...marker_regression page | Zachary Sloan |
| 2013-01-08 | Created IndChromosome class in species.py and wrote functions for...chromosome-related attributes Began to try and pass qtlreaper results as js_data to use when drawing graphs | Zachary Sloan |
| 2013-01-08 | Deleted some unnecessary code in marker_regression.py and fixed some bugs...Added a couple utility functions to the Chromosomes class in species.py | Zachary Sloan |
| 2013-01-04 | Continued rewriting marker_regression.py code | Zachary Sloan |
| 2013-01-04 | Correct results are being returned from reaper for the marker regression page | Zachary Sloan |
| 2013-01-03 | Began working on marker_regression.py and created Chromosomes class...in species.py | Zachary Sloan |
| 2013-01-03 | marker_regression page is up again | Zachary Sloan |
| 2013-01-03 | Created template for marek regression page and made the compute button direct...to it added asbolute_import in data_set.py and trait.py Made several minor changes and deleted commented out code in trait.py | Zachary Sloan |
| 2012-12-20 | Changed layout of marker regression options | Zachary Sloan |
| 2012-12-20 | The control locus field in the interval mapping settings is now disabled if..."choose closest control" is set to "yes" | Zachary Sloan |
| 2012-12-20 | Made composite mapping options show/hide for the interval mapping section | Zachary Sloan |
| 2012-12-20 | More changes to the layout of interval mapping options | Zachary Sloan |
| 2012-12-20 | Continued to customize the interval mapping menu | Zachary Sloan |
| 2012-12-20 | Improved appearance/layout of the interval mapping tab using bootstrap | Zachary Sloan |
| 2012-12-20 | Form data passed via POST for marker regression...Removed "Use Parents" and "Use Weighted" Created text box to input # permutations for pair scan | Zachary Sloan |
| 2012-12-18 | Changed html for the marker regression tab...Created file show_trait_mapping_tools.coffee to handle submitting the form to the marker regression page Changed form name/id in show_trait.html to "trait_data_form" | Zachary Sloan |
| 2012-12-18 | Created new file species.py and species class object TheSpecies...Converted html for the mapping tabs to bootstrap and redid html inside of the Interval Mapping tab Added text input for # of permutation tests and bootstrap tests | Zachary Sloan |
| 2012-12-07 | Got links working for statistics table labels | Zachary Sloan |
| 2012-12-07 | Got basic statistics in show_trait to display the correct number...of samples for each group Got show_trait page to display for genotype traits | Zachary Sloan |
| 2012-12-07 | Got show_trait page to appear again for phenotype traits...Need to see why other samples list doesn't appear for traits in BXDPublishedPhenotypes | Zachary Sloan |
| 2012-12-06 | All 10 stats working | Zachary Sloan |
| 2012-12-06 | Continued work on basic statistics table in show_trait...Continued work towards getting show_trait to work with phenotype traits | Zachary Sloan |
| 2012-12-06 | Added minimum/maximum to basic statistics table...Continued bug-shooting related to getting show_trait running with phenotype traits | Zachary Sloan |
| 2012-12-06 | Got show_trait running again for MrnaAssay traits | Zachary Sloan |
| 2012-12-06 | Made many small changes to show_trait/data_set/search_results/trait to...remove use of the formData object and cursor | Zachary Sloan |
| 2012-12-05 | Renamed webqtlTrait.py to trait.py...Renamed webqtlTrait class to GeneralTrait Began process of removing fd from show_trait.py Created DatasetGroup object in data_set.py (this may end up becoming its own file later if it becomes big enough) | Zachary Sloan |
| 2012-12-05 | Continued to make changes related to getting rid of cursor/db_conn...and using simple sqlalchemy Got Pheno/MrnaAssay dataset searches working again | Zachary Sloan |
| 2012-12-04 | Changed parser to allow quotes (i.e. name="rw williams")...Renamed webqtlTrait to GeneralTrait and began rewriting parts Changed database code in many places to use simple sqlalchemy | Zachary Sloan |
| 2012-12-04 | Began changing references to cursor/db_conn to use sqlalchemy...Wrote function for phenotype author searches | Zachary Sloan |
| 2012-11-30 | Added example of escaping strings now that trasitioning to simple SQLAlchemy | Zachary Sloan |
| 2012-11-30 | Started switching to using basic sqlalchemy to handle db connection/queries...Began fixing bugs related to this fix, still in progress | Zachary Sloan |
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