| Age | Commit message (Expand) | Author |
|---|
| 2013-10-09 | Improved some of the code related to the correlation page...For example, changed the two functions getting gene symbols and ids
for a dataset into one function that can take a column name as a
parameter
| Lei Yan |
| 2013-10-08 | Literature correlation works when it is selected as the sorted...correlation type (that is, when it is run again all traits in a
database)
Added a function to data_set.py that gets all the gene_ids in the
data set. Not sure if having a separate function for getting
the gene_ids and another for getting the gene symbols makes sense.
| Lei Yan |
| 2013-10-08 | Did some work with interval mapping page; will use qtl reaper to do...the mapping, since it is reliable/fast and avoids us having to rewrite
from scratch using something like r/qtl
| Zachary Sloan |
| 2013-10-07 | Worked on logins, session_ids, flash messages, etc. | Sam |
| 2013-10-06 | Before writing login code | Sam |
| 2013-10-03 | Much more progess on logging in:...* Verifying emails now works
* Redid user manager
| Sam |
| 2013-10-02 | Half the verification code for email addresses is done | Sam |
| 2013-09-27 | Downloaded the TableTools library so tables can be exported/saved | Lei Yan |
| 2013-09-27 | Added trait links to correlation results...Began adding the code that does the initial sort by literature
correlation
| Lei Yan |
| 2013-09-27 | User registration beginning to work (at least the first stage) | Sam |
| 2013-09-27 | Before fixing an issue in pbkdf2 | Sam |
| 2013-09-24 | Did some work towards doing the tissue correlation for all traits...in a dataset (in order to sort by tissue correlation instead of
sample correlation).
| root |
| 2013-09-24 | before deleting more of the security flask stuff | Sam |
| 2013-09-24 | Just committing a few additions to the interval mapping code | Zachary Sloan |
| 2013-09-24 | Fixed the db_tools import in mrna_assay_tissue_data.py...Added file for the interval mapping page and wrote code that
gets/sets some parameters
| Zachary Sloan |
| 2013-09-20 | Tissue correlation results work for sample r/rho correlation page...and are written to the template
| Lei Yan |
| 2013-09-13 | Merge /home/lei/gene | Zachary Sloan |
| 2013-09-13 | Added file that will convert genofiles to plink ped/map files | Zachary Sloan |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork...Resolved conflicts:
wqflask/base/trait.py
wqflask/wqflask/correlation/correlationFunction.py
wqflask/wqflask/correlation/correlation_function.py
wqflask/wqflask/correlation/correlation_functions.py
wqflask/wqflask/correlation/show_corr_results.py
| Lei Yan |
| 2013-09-06 | Registration form validaiton without js works | Sam |
| 2013-09-05 | Missed some files in last checkin so adding them now | Sam |
| 2013-09-05 | Switched registration form to no longer be modal, but instead it's own page...Added validation of form using parsley.js
Added password strength indicator using zxcvbn
| Sam |
| 2013-09-05 | Adjusting to using our own registariton package | Sam |
| 2013-09-04 | Trying to trace through files | Sam |
| 2013-08-28 | Various changes to track down what happens with security modules | Sam |
| 2013-08-23 | Finally figured out where to put flask_security into the code...Various registration template changes
| Sam |
| 2013-08-23 | Working on user registration and added nginx conf for my branch | Sam |
| 2013-08-21 | Fixed an issue where correlationFunction was being imported...instead of its updated name correlation_function
| Zachary Sloan |
| 2013-08-21 | Just removed a couple print statements | Zachary Sloan |
| 2013-08-15 | Removed the markers with no variance (and thus no p-values) from the...manhattan plot
| Zachary Sloan |
| 2013-08-14 | Merge branch 'master' of https://github.com/zsloan/genenetwork | Zachary Sloan |
| 2013-08-14 | Made some changes related to getting marker regression working for...some datasets
| Zachary Sloan |
| 2013-08-14 | Removed some duplicate files in the maintenance folder | Zachary Sloan |
| 2013-08-13 | Added several test files and the file with the class that...they import (browser_test.py)
| Zachary Sloan |
| 2013-08-08 | Fixed issue where points in marker regression manhattan plot...weren't positioned on the x-axis
| Zachary Sloan |
| 2013-08-07 | Fixed things with the dataset dropdowns and mRNA datasets...Improved the templates for a couple pages related to changing user
password, etc
| Zachary Sloan |
| 2013-08-02 | Fixed a bug related to groups with genofiles (not sure if it makes sense...for them not to have genofiles yet)
| Zachary Sloan |
| 2013-07-30 | Just added some print statements to debug an issue with LMM code...Also added some to notes
| Zachary Sloan |
| 2013-07-23 | Fixed a couple issues with he quick_search_table.py script...Added notes on using percona to optimise mysql to gn_installation_notes.txt
Started moving "get_trait_data" to DataSet since it is the same regardless
of the particular DataSet subclass (PhenotypeDataSet, MrnaAssayDataSet, etc)
| Zachary Sloan |
| 2013-07-19 | Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need
to read the file every single time someone loads a page
| Zachary Sloan |
| 2013-07-19 | Created file gen_group_samplelists that iterates through all genofiles...and builds each groups' samplelist
| Zachary Sloan |
| 2013-07-18 | Added Amelie's rat data genotypes...Got human mapping mostly working
Fixed dataset dropdown menus
| Zachary Sloan |
| 2013-07-18 | Merge branch 'master' of https://github.com/zsloan/genenetwork...Conflicts:
wqflask/base/webqtlConfigLocal.py
wqflask/maintenance/gen_select_dataset.py
wqflask/wqflask/static/new/javascript/dataset_menu_structure.json
| Zachary Sloan |
| 2013-07-18 | Added to installation notes...Removed webqtlConfigLocal file containing passwords
Updated main page dropdown menus (dataset_menu_structure.json)
| Zachary Sloan |
| 2013-07-17 | Fixed gen_select_dataset.py...Appended redis installation info to notes
| Zachary Sloan |
| 2013-07-16 | Merge branch 'master' of https://github.com/zsloan/genenetwork...Conflicts:
misc/gn_installation_notes.txt
| Zachary Sloan |
| 2013-07-16 | Wrote code that can get a dataset's type for every single GN...dataset; previously we could not view traits in datasets that
were not in the DBType table in the database
| Zachary Sloan |
| 2013-07-12 | Rewrote code related to getting the tissue correlation column to display...Created new files for mrna assay tissue data and commonly used
db query related functions
| Lei Yan |
| 2013-07-11 | Began changing the style of the code related to the tissue correlation column...of the correlation page
| Lei Yan |
| 2013-07-10 | Updated gn_installation_notes | Zachary Sloan |
