| Age | Commit message (Expand) | Author |
|---|
| 2016-10-05 | Reverted on genotype selector on page show_trait_mapping_tools.html - pending... | Pjotr Prins |
| 2016-10-05 | print statements should be logger | Pjotr Prins |
| 2016-10-05 | print statements should be logger | Pjotr Prins |
| 2016-10-05 | Merge branch 'zsloan' into json | Pjotr Prins |
| 2016-10-05 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
| 2016-10-04 | Fixed issue that caused adding to existing collections when not logged in to ......The problem was that it would get the collection name from the "new_collection" field instead of the "existing_collections" dropdown.
| zsloan |
| 2016-10-04 | Merge branch 'master' of github.com:zsloan/genenetwork2 into zsloan | Pjotr Prins |
| 2016-10-03 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | zsloan |
| 2016-10-03 | Fixed problem that caused R/qtl with permutations to not work correctly | zsloan |
| 2016-10-03 | Moved rqtl mapping code out of marker_regression and into its own file....Later we will want to run all mapping methods outside of the web server, though
| zsloan |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins |
| 2016-10-03 | Config: use server port setting | Pjotr Prins |
| 2016-10-03 | Error page: reduce cookie size | Pjotr Prins |
| 2016-10-02 | Error page: trim error messages | Pjotr Prins |
| 2016-10-02 | Errors: added time stamps in UTC | Pjotr Prins |
| 2016-10-02 | Error page: also display the URL | Pjotr Prins |
| 2016-10-02 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins |
| 2016-10-02 | Error page: use cookies to fixate the animation for one error | Pjotr Prins |
| 2016-10-02 | Error: remove test error | Pjotr Prins |
| 2016-10-02 | Error screen improvements with animated gifs | Pjotr Prins |
| 2016-09-30 | Merge pull request #192 from lyan6/master...Fix global search "il6" for "Internal Server Error". Add single quote… | Pjotr Prins |
| 2016-09-30 | Add missing __init__.py | Pjotr Prins |
| 2016-09-30 | Add logging for qtlreaper | Pjotr Prins |
| 2016-09-29 | Fix global search "il6" for "Internal Server Error". Add single quotes into M... | Lei Yan |
| 2016-09-27 | Conflict in wqflask/wqflask/templates/show_trait_mapping_tools.html | zsloan |
| 2016-09-26 | Test: mechanical Rob executes scanone test | Pjotr Prins |
| 2016-09-25 | Logger: use output for assessing mapping parameters | Pjotr Prins |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
| 2016-09-25 | Settings: enforce MAPPING_PATH only when running plink_gemma | Pjotr Prins |
| 2016-09-25 | I was getting below error with the small database. This commit, at least, does...not assume the item exists.
ERROR:wqflask:Exception on /marker_regression [POST]
Traceback (most recent call last):
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1817, in wsgi_app
response = self.full_dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1477, in full_dispatch_request
rv = self.handle_user_exception(e)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1381, in handle_user_exception
reraise(exc_type, exc_value, tb)
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1475, in full_dispatch_request
rv = self.dispatch_request()
File "/home/wrk/.guix-profile/lib/python2.7/site-packages/Flask-0.10.1-py2.7.egg/flask/app.py", line 1461, in dispatch_request
return self.view_functions[rule.endpoint](**req.view_args)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/views.py", line 460, in marker_regression_page
template_vars = marker_regression.MarkerRegression(start_vars, temp_uuid)
File "/export2/izip/git/opensource/genenetwork/sumo_gn2/wqflask/wqflask/marker_regression/marker_regression.py", line 74, in __init__
value = start_vars['value:' + sample]
KeyError: 'value:BXD80'
| Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-13 | Save Image now works for Network Graph and downloads current graph as a png | zsloan |
| 2016-09-13 | Fixed the path for the json file in gen_select_dataset.py since it was wrong ......Added "Reset" option to network graph that returns all the nodes/edges
Made the visualization options area in the network graph a little wider
| zsloan |
| 2016-09-13 | Run scripts from ./wqflask - just like the webserver | Pjotr Prins |
| 2016-09-10 | Comment | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
| 2016-09-10 | Merge branch 'development' of github.com:genenetwork/genenetwork2 into zsloan | Pjotr Prins |
| 2016-09-09 | Added a couple options for network graph - Focus Trait, Layout, and a correla......Changed/added a couple node/edge attributes for network graph
Updated dataset menu structure json file to include the human RETINA data set
Added css file for network graph page (specifically to make the appearance of the options resemble the RETINA website's)
| zsloan |
| 2016-09-09 | Merge branch 'master' of github.com:genenetwork/genenetwork2 | Pjotr Prins |
| 2016-09-02 | Added Network Graph feature that uses cytoscape.js. Currently you can view GN......Fixed issue that caused error with correlation page
| zsloan |
| 2016-08-26 | Fixed appearance (border width mostly) of basic stats table on trait page...Removed unnecessary datatables javascript code that referred to basic stats table
| zsloan |
| 2016-08-24 | Fixed issue causing bootstrap results to not plot correctly. | zsloan |
| 2016-08-24 | Replaced post-publication description with pre-publication description for co......Fixed table style for mapping results and interval analyst tables and added additive/dominance effect columns to the former
Fixed mapping figure X-axis to accurately label Centimorgans vs Megabases (previously it would always say Megabases)
Removed the "Sequence Site" marker from mapping result figure when mapping with genetics (centimorgans) scale
Removed some unused javascript libary imports from search/global search pages
| zsloan |
| 2016-08-17 | Updated dataTables from 1.10.8 to 1.10.12 on search result page | zsloan |
| 2016-08-17 | Fixed problem where Year column didn't sort properly in phenotype search and ... | zsloan |
| 2016-08-16 | Users can now select specific traits from collection when using collection to......To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url
Duplicate traits can no longer by added to collections
Fixed the digits for a few table columns in collection (additive effect, etc).
| zsloan |
| 2016-08-15 | Removed text recommending winsoring when mapping since that feature isn't imp......Added padding to header text of Basic Statistics table
| zsloan |
| 2016-08-12 | Changed pop-up asking to import collections to less obtrusive checkbox...Decreased collections/list table width
| zsloan |
| 2016-08-11 | Added prompt when user logs in that lets them choose to import existing anony... | zsloan |
