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2013-11-01In the process of opening a modal with the collection page insideZachary Sloan
2013-11-01In the process of adding the function to color bar chart by theZachary Sloan
values of a trait in your collection
2013-11-01Merge /home/sam/geneZachary Sloan
2013-11-01Made the extra attribute bar chart coloring continue to workZachary Sloan
when the user sorts and gave the option to revert to no coloring
2013-10-31Refactored login code and got remember me workingSam
2013-10-31Implemented superuser and switching users for debugging purposesSam
2013-10-30More work on collectionsSam
2013-10-30Got coloring by attribute working for the bar chartZachary Sloan
2013-10-30In process on view.html for user_collectionsSam
2013-10-30Progress on user collectionsSam
2013-10-25Began working on color coding bar chart by extra attributesZachary Sloan
2013-10-24Added a dynamically resortable bar chart to the trait pageZachary Sloan
Improved the look/feel of the correlation page somewhat
2013-10-23Adding new collections worksSam
2013-10-22Bunch of work on collections and user managementSam
2013-10-16Added interval_mapping to views.pyZachary Sloan
Made some more changes to interval_mapping.py
2013-10-16security code cleanupSam
2013-10-15Merge /home/zas1024/geneSam
2013-10-15Password reset now works...but needs some error checking stillSam
2013-10-15Before getting rid of query_string in DecodeUserSam
2013-10-15Changed templates to call the header macroZachary Sloan
Correlation page now works with Non-BXD (or whatever group) or All Samples options
2013-10-15* Redid mail sending service to set a ping showing it's aliveSam
* Redid server so it wouldn't start unless mail service recently pinged * Wrote a bunch of forgot password code * Refactored sending email about verification and forgotten passwords
2013-10-11Merge /home/sam/geneZachary Sloan
2013-10-11Small changes around logging inSam
2013-10-11Merge /home/lei/geneZachary Sloan
Conflicts: wqflask/maintenance/quick_search_table.py
2013-10-10Almost have correlation working for non-primary strain/groupLei Yan
There's just some issue with parents/f1s not being included if you select non-BXD (or whatever the group is). All Samples, however does work.
2013-10-09Improved some of the code related to the correlation pageLei Yan
For example, changed the two functions getting gene symbols and ids for a dataset into one function that can take a column name as a parameter
2013-10-08Literature correlation works when it is selected as the sortedLei Yan
correlation type (that is, when it is run again all traits in a database) Added a function to data_set.py that gets all the gene_ids in the data set. Not sure if having a separate function for getting the gene_ids and another for getting the gene symbols makes sense.
2013-10-08Did some work with interval mapping page; will use qtl reaper to doZachary Sloan
the mapping, since it is reliable/fast and avoids us having to rewrite from scratch using something like r/qtl
2013-10-07Worked on logins, session_ids, flash messages, etc.Sam
2013-10-06Before writing login codeSam
2013-10-03Much more progess on logging in:Sam
* Verifying emails now works * Redid user manager
2013-10-02Half the verification code for email addresses is doneSam
2013-09-27Downloaded the TableTools library so tables can be exported/savedLei Yan
2013-09-27Added trait links to correlation resultsLei Yan
Began adding the code that does the initial sort by literature correlation
2013-09-27User registration beginning to work (at least the first stage)Sam
2013-09-27Before fixing an issue in pbkdf2Sam
2013-09-24Did some work towards doing the tissue correlation for all traitsroot
in a dataset (in order to sort by tissue correlation instead of sample correlation).
2013-09-24before deleting more of the security flask stuffSam
2013-09-24Just committing a few additions to the interval mapping codeZachary Sloan
2013-09-24Fixed the db_tools import in mrna_assay_tissue_data.pyZachary Sloan
Added file for the interval mapping page and wrote code that gets/sets some parameters
2013-09-20Tissue correlation results work for sample r/rho correlation pageLei Yan
and are written to the template
2013-09-13Merge /home/lei/geneZachary Sloan
2013-09-13Added file that will convert genofiles to plink ped/map filesZachary Sloan
2013-09-13Merge https://github.com/zsloan/genenetworkLei Yan
Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py
2013-09-06Registration form validaiton without js worksSam
2013-09-05Missed some files in last checkin so adding them nowSam
2013-09-05Switched registration form to no longer be modal, but instead it's own pageSam
Added validation of form using parsley.js Added password strength indicator using zxcvbn
2013-09-05Adjusting to using our own registariton packageSam
2013-09-04Trying to trace through filesSam
2013-08-28Various changes to track down what happens with security modulesSam