| Age | Commit message (Expand) | Author |
|---|---|---|
| 2020-08-31 | Fixed issue that was causing updating resource default privileges to not...work * wqflask/utility/redis_tools.py - There was an issue where resources wouldn't be updated if they already existed. This is because the code didn't yet account for the "update" tag (that is meant to give the option of preventing updating resources when running the script to enter all resources into Redis). I changed the logic to add a resource if "update" is True or the resource doesn't already exist (so it won't if update is False and the resource exists). | zsloan |
| 2020-08-31 | Use d3-tip from guix | BonfaceKilz |
| 2020-08-31 | Use chroma from guix...* wqflask/wqflask/templates/correlation_matrix.html: Fetch chroma from guix profile | BonfaceKilz |
| 2020-08-31 | Merge pull request #428 from BonfaceKilz/chore/delete-datatables-extensions-f......Delete dataTables and it's extensions from git | BonfaceKilz |
| 2020-08-31 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB * wqflask/utility/authentication_tools.py - Changed get_group_code to return an empty string instead of None if InbredSetCode doesn't exist for a dataset group * wqflask/wqflask/views.py - Changed zipped export filename to "export_(datetime)" instead of "collection_(datetime)" since this export can occur from both the collection page and the global search page | zsloan |
| 2020-08-29 | Fixed issue with exporting traits from multiple different groups from...the collection page (the filename wasn't being set) * wqflask/wqflask/views.py - Set filename to "collection_(datetime)" in export_traits_csv because it wasn't being set before | zsloan |
| 2020-08-28 | Delete dataTables and it's extensions from git...* wqflask/wqflask/static/new/packages/DataTables/: Delete folder. | BonfaceKilz |
| 2020-08-28 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-27 | Added logic that creates a user account if an e-mail is added to a group...that isn't already associated with a GN2 account and sends the user an e-mail; still need to test * wqflask/wqflask/group_manager.py - Added logic sending an invitation e-mail if user_details aren't found for any of the e-mails provided when adding users to a group | zsloan |
| 2020-08-27 | Added function for sending an invitation e-mail...* wqflask/wqflask/user_login.py - Added send_invitation_email function, which does what it says | zsloan |
| 2020-08-27 | Added manager_user.html because it was missing from git | zsloan |
| 2020-08-27 | Add check for empty group_code when adding a new resource...* wqflask/utility/authentication_tools.py(add_new_resource): If group_code is "None", an error is thrown when you try to: `group_code + "_" + str(trait_id)` | BonfaceKilz |
| 2020-08-27 | Add a check for a "uuid" object...* wqflask/wqflask/views.py(json_default_handler): Check for "uuid.UUID" instance to avoid TypeError. | BonfaceKilz |
| 2020-08-27 | Update imports...* wqflask/wqflask/api/router.py: Break imports into separate lines and remove unused ones. | BonfaceKilz |
| 2020-08-27 | Remove python2 string processing to utf-8...* wqflask/base/trait.py: Remove python2 codecs.BOM_UTF8 methods. * wqflask/wqflask/search_results.py: Remove utf-8 decode method on string. | BonfaceKilz |
| 2020-08-27 | Remove relative imports...* wqflask/runserver.py: Relative imports leads to import errors. | BonfaceKilz |
| 2020-08-27 | Replace dict.iteritems() with dict.items()..."iteritems()" got omitted in python3.X | BonfaceKilz |
| 2020-08-27 | Convert sibling imports to relative imports...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-import> | BonfaceKilz |
| 2020-08-27 | Import "reduce" without a try block...* wqflask/wqflask/correlation_matrix/show_corr_matrix.py: Import 'reduce' | BonfaceKilz |
| 2020-08-27 | Replace string arguments to "hmac.new" with bytearray...See: <https://stackoverflow.com/questions/31848293/python3-and-hmac-how-to-handle-string-not-being-binary> | BonfaceKilz |
| 2020-08-27 | Fix failing tests | BonfaceKilz |
| 2020-08-27 | Apply pep-8 formatting | BonfaceKilz |
| 2020-08-27 | Remove comment block | BonfaceKilz |
| 2020-08-27 | Replace mysqldb's "escape" with the one from utils.db_tools...Mysqldb's escape returns a binary string. Use utils.db_tools which adds an extra step of converting the binary string to a string. | BonfaceKilz |
| 2020-08-27 | Remove redundant methods which are defined elsewhere...* wqflask/base/data_set.py: Delete "create_in_clause", and "mescape" which are defined in "utility.db_tools" | BonfaceKilz |
| 2020-08-27 | Add global method to convert binary string to plain string...* wqflask/utility/db_tools.py: escape_string returns a binary string which introduces a bug when composing sql query string. The escaped strings have to be converted to plain text. | BonfaceKilz |
| 2020-08-27 | Remove unused imports | BonfaceKilz |
| 2020-08-27 | Replace "string.split" & "string.join" with python's inbuilt methods | BonfaceKilz |
| 2020-08-26 | Remove debug statement...* wqflask/wqflask/views.py(search_page): "debugf" raises an error since the first arg is expected to be an int | BonfaceKilz |
| 2020-08-26 | Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future> | BonfaceKilz |
| 2020-08-26 | Replace "__cmp__" with "__eq__" magic method...* wqflask/base/GeneralObject.py: "__cmp__" is no longer used in python3. See: <https://stackoverflow.com/questions/8276983/why-cant-i-use-the-method-cmp-in-python-3-as-for-python-2> | BonfaceKilz |
| 2020-08-26 | Rename "unicode" to "str"...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-unicode> | BonfaceKilz |
| 2020-08-26 | Replace calls to "basestring with "str""...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-basestring> | BonfaceKilz |
| 2020-08-26 | Fix failing tests that use python2-htmlgen...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Fix tests. | BonfaceKilz |
| 2020-08-26 | Replace python2-htmlgen with python-htmlgen...* wqflask/wqflask/marker_regression/display_mapping_results.py: Use python-htmlgen | BonfaceKilz |
| 2020-08-25 | Merge branch 'testing' of github.com:genenetwork/genenetwork2 into testing | zsloan |
| 2020-08-25 | Fixed issue in DatasetType that caused an error when trying to load new...datasets * wqflask/base/data_set.py - Added fetchone() to g.db.execute() which is what was causing the error | zsloan |
| 2020-08-26 | Update corestats import...* wqflask/utility/Plot.py: import corestats from the utility module. | BonfaceKilz |
| 2020-08-26 | Remove unused imports | BonfaceKilz |
| 2020-08-26 | Merge branch 'testing' into build/python3-migration | BonfaceKilz |
| 2020-08-25 | Merge pull request #427 from BonfaceKilz/Build/add-scientific-js-datatables-p......Build/add scientific js datatables plugin | zsloan |
| 2020-08-25 | This should fix an issue where the new qtlreaper wouldn't work properlty...with genotypes that only have cM positions * wqflask/wqflask/marker_regression/qtlreaper_mapping.py - parse_reaper_output is changed to check if cM and Mb exist in output when creating marker obs * wqflask/wqflask/marker_regression/run_mapping.py - Changed export_mapping_results to properly deal with all combinations of cM and Mb positions (both and either/or) | zsloan |
| 2020-08-25 | Merge pull request #425 from BonfaceKilz/refactor/extract-htmlgen-methods-to-......Refactor/extract htmlgen methods to wrapper class | zsloan |
| 2020-08-25 | Use scientific.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Use natural.js dataTables extension plugin from guix | BonfaceKilz |
| 2020-08-24 | Remove non-keyword args...* wqflask/wqflask/marker_regression/display_mapping_results.py (HtmlGenWrapper)[create_image_tag]: Remove "src" and "alt" as function parameters. | BonfaceKilz |
| 2020-08-24 | Replace "HtmlGen" method calls with those from "HtmlGenWrapper"...* wqflask/wqflask/marker_regression/display_mapping_results.py (DisplayMappingResults): Replace direct calls to HtmlGen with methods from the constructed wrapper class "HtmlGenWrapper". | BonfaceKilz |
| 2020-08-24 | Add new wrapper class for HtmlGen method...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add new class | BonfaceKilz |
| 2020-08-24 | Add tests for the HtmlGenWrapper class...* wqflask/tests/wqflask/marker_regression/test_display_mapping_results.py: Add new tests | BonfaceKilz |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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