Age | Commit message (Expand) | Author |
2015-03-14 | More MAF | Pjotr Prins |
2015-03-14 | Replace missing values with MAF | Pjotr Prins |
2015-03-14 | Testing kinship works on small G | Pjotr Prins |
2015-03-14 | Merge branch 'zsloan' into dev | Pjotr Prins |
2015-03-14 | kinship: working on pylmm | Pjotr Prins |
2015-03-13 | runlmm.py: remove extraneous conversion | Pjotr Prins |
2015-03-13 | & Refactoring | Pjotr Prins |
2015-03-13 | & runlmm.py: added assertions for default run | Pjotr Prins |
2015-03-12 | lmm: use deep-copy to avoid side-effects | Pjotr Prins |
2015-03-12 | weird fix for lmm result - Python weirdness | Pjotr Prins |
2015-03-12 | Check G | Pjotr Prins |
2015-03-12 | Debug info | Pjotr Prins |
2015-03-12 | process_plink.py: remove unused file | Pjotr Prins |
2015-03-12 | Combined searches now work for most terms...Fixed appearance of the scatterplot matrix
Changed pylmm code back because of an error after I had switched to Pjotr's code
| Zachary Sloan |
2015-03-12 | Just committing changes to search so I can pull to production branch | Zachary Sloan |
2015-03-11 | runlmm.py: message | Pjotr Prins |
2015-03-11 | Adding multi-core kinship.py | Pjotr Prins |
2015-03-11 | lmm.py: change message on running from CLI | Pjotr Prins |
2015-03-11 | & Added testing option, now the results match | Pjotr Prins |
2015-03-10 | Normalisation | Pjotr Prins |
2015-03-10 | lmm.py: debugging output | Pjotr Prins |
2015-03-10 | Missing genotypes and normalize | Pjotr Prins |
2015-03-10 | Populationg Redis from TSV data | Pjotr Prins |
2015-03-10 | Refactored tsvreader out | Pjotr Prins |
2015-03-10 | Factoring out tsvreaders | Pjotr Prins |
2015-03-10 | convertlmm.py: add SNP names | Pjotr Prins |
2015-03-10 | Turn HAB encoding into pylmm genotyping | Pjotr Prins |
2015-03-09 | Add HAB encoding | Pjotr Prins |
2015-03-09 | Write genotype file non-transposed | Pjotr Prins |
2015-03-09 | Write genotype file (start) | Pjotr Prins |
2015-03-09 | Write genotype file (start) | Pjotr Prins |
2015-03-09 | plink: missing values in bim | Pjotr Prins |
2015-03-09 | Now we can use print in lamdba | Pjotr Prins |
2015-03-09 | Not using numpy - is part of the caller | Pjotr Prins |
2015-03-09 | plink: no need to know the number of SNPs, but you need INDs | Pjotr Prins |
2015-03-09 | plink support | Pjotr Prins |
2015-03-09 | convertlmm.py: options.geno | Pjotr Prins |
2015-03-09 | convertlmm.py: plink support | Pjotr Prins |
2015-03-09 | Parse new phenotype format | Pjotr Prins |
2015-03-09 | Parse new phenotype format | Pjotr Prins |
2015-03-07 | Write phenotypes | Pjotr Prins |
2015-03-07 | Kinship converter | Pjotr Prins |
2015-03-05 | Kinship file format support (reader and writer) | Pjotr Prins |
2015-03-05 | Convert textual kinship file | Pjotr Prins |
2015-03-05 | Helpers to split out functionality | Pjotr Prins |
2015-03-05 | Removed execution flag x from files | Pjotr Prins |
2015-03-03 | fix print | Pjotr Prins |
2015-03-01 | Warning | Pjotr Prins |
2015-03-01 | Add warning to running lmm.py from the command line | Pjotr Prins |
2015-02-28 | Started adaptations for introducing multi-core version | Pjotr Prins |