genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2013-02-28	Added benchmark.py that compares the time of various operations	Zachary Sloan
	and gives a report with the percent of total computation time each takes
2013-02-21	Add my_pylmm package	Zachary Sloan

2013-02-13	Got results displaying for BXD and fixed genofile_parser.py to work	Zachary Sloan
	for all of our genofiles
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan
	and their corresponding markers to be used in the table of qtl results and other figures
2013-02-08	Converted .geno files to json files and wrote code in marker_regression.py	Zachary Sloan
	that loads the json files, converts them into the relevant numpy arrays, and passes them into Nick's code (which is returning results that may or may not be correct, but is at least running)
2013-02-07	Added code to marker_regression.py that creates the numpy arrays to	Zachary Sloan
	pass to Nick's code and changed the prep_data.py code to operate on a list of phenotype values instead of a textfile with the values delimited
2013-02-06	Edited genofile_parser.py to go through all genofiles and convert	Zachary Sloan
	them to the format used by nick's code