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path: root/wqflask/wqflask/my_pylmm
AgeCommit message (Expand)Author
2014-01-29Limited number of markers in marker regression result table toZachary Sloan
2014-01-24Added natural sort to sort the index column for the sample data inZachary Sloan
2014-01-23Histogram is workingZachary Sloan
2014-01-03Wrote some code for the histogram figureZachary Sloan
2013-12-30Fixed issue where box plots initially appeared below the bar chartZachary Sloan
2013-12-05Interval map graph now works properlyZachary Sloan
2013-09-13Added file that will convert genofiles to plink ped/map filesZachary Sloan
2013-08-15Removed the markers with no variance (and thus no p-values) from theZachary Sloan
2013-08-14Made some changes related to getting marker regression working forZachary Sloan
2013-08-07Fixed things with the dataset dropdowns and mRNA datasetsZachary Sloan
2013-07-30Just added some print statements to debug an issue with LMM codeZachary Sloan
2013-07-23Fixed a couple issues with he quick_search_table.py scriptZachary Sloan
2013-07-18Added Amelie's rat data genotypesZachary Sloan
2013-05-31Fixed the location column for the quick search pageZachary Sloan
2013-05-09Just added some print statements so I can show matrix/vectorZachary Sloan
2013-05-02Got quick search code running (but not displaying properly)Zachary Sloan
2013-04-30Did a little with correlation_plot.pyZachary Sloan
2013-04-26Added file that checks how much time is added to a loop's runtime by print st...Zachary Sloan
2013-04-24Began writing code that writes some objects used in LMM to redisZachary Sloan
2013-04-23Created file correlation_plot.py for the correlation scatterplotZachary Sloan
2013-04-19Fixed the issue with the x-axis coordinates for marker regression plotZachary Sloan
2013-04-18The plink_input is split into chunks that are stored in temp_data, butZachary Sloan
2013-04-18LMM code now reads in gzipped pickled plink snp iterator objectZachary Sloan
2013-04-18input file is now loaded by pickleZachary Sloan
2013-04-17Created file with pickled SNPIterator (from input.py) dataZachary Sloan
2013-04-17Added a benchmark for running the chunks code on the list of snpsZachary Sloan
2013-04-17Renamed chunk_test.py to chunks.pyZachary Sloan
2013-04-17Updated chunk_test.pyZachary Sloan
2013-04-17Added chunk_test.py which compared my/ and sam's split intoZachary Sloan
2013-04-17Wrote code that tests the effectiveness of the function that divides aZachary Sloan
2013-04-17Fixed small issue with the divide_into_chunks functionZachary Sloan
2013-04-16Wrote functions that divide a list into a specified number of chunksZachary Sloan
2013-04-16Checking in before making some changesZachary Sloan
2013-04-16Put most of the code calculating human association statistics inZachary Sloan
2013-04-09Nick's code works fine with human dataZachary Sloan
2013-04-05Loading bar now correctly shows the time to completionZachary Sloan
2013-04-05Got Nick's code working with the MDP datasets under the BXD group,Zachary Sloan
2013-04-02Finished adding code that uses the plink genotype data ifZachary Sloan
2013-04-02pylmm code is running for human data (plink .bed genotype files)Zachary Sloan
2013-03-28quick_search_table.py seems to be running OK for the PublishXRefZachary Sloan
2013-03-26Just checking in code while in the process of trying to getZachary Sloan
2013-03-22Removed zach_settings.py from git trackingZachary Sloan
2013-03-21Did some work towards getting Nick's code working with our plinkZachary Sloan
2013-03-19In the process of trying to use Nick's pylmmKinship.py code toZachary Sloan
2013-03-19Added Nick's input.py file which uses plink .ped files as inputZachary Sloan
2013-03-08Caching is working for marker regression but really slowlyZachary Sloan
2013-03-08Refactored GWAS function in lmm.pyZachary Sloan
2013-03-07Progress bar is now completely workingZachary Sloan
2013-03-07Created file temp_data to store data related to progressZachary Sloan
2013-03-06Stored percent of calculate_kinship function completion inZachary Sloan
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