genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-04-02	Finished adding code that uses the plink genotype data if	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-03-28	quick_search_table.py seems to be running OK for the PublishXRef	Zachary Sloan
2013-03-26	Just checking in code while in the process of trying to get	Zachary Sloan
2013-03-22	Removed zach_settings.py from git tracking	Zachary Sloan
2013-03-21	Did some work towards getting Nick's code working with our plink	Zachary Sloan
2013-03-19	In the process of trying to use Nick's pylmmKinship.py code to	Zachary Sloan
2013-03-19	Added Nick's input.py file which uses plink .ped files as input	Zachary Sloan
2013-03-08	Caching is working for marker regression but really slowly	Zachary Sloan
2013-03-08	Refactored GWAS function in lmm.py	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan
2013-03-07	Created file temp_data to store data related to progress	Zachary Sloan
2013-03-06	Stored percent of calculate_kinship function completion in	Zachary Sloan
2013-02-28	Added benchmark.py that compares the time of various operations	Zachary Sloan
2013-02-21	Add my_pylmm package	Zachary Sloan
2013-02-13	Got results displaying for BXD and fixed genofile_parser.py to work	Zachary Sloan
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan
2013-02-08	Converted .geno files to json files and wrote code in marker_regression.py	Zachary Sloan
2013-02-07	Added code to marker_regression.py that creates the numpy arrays to	Zachary Sloan
2013-02-06	Edited genofile_parser.py to go through all genofiles and convert	Zachary Sloan