genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Expand)	Author
2013-05-31	Fixed the location column for the quick search page	Zachary Sloan
2013-05-09	Just added some print statements so I can show matrix/vector	Zachary Sloan
2013-05-02	Got quick search code running (but not displaying properly)	Zachary Sloan
2013-04-30	Did a little with correlation_plot.py	Zachary Sloan
2013-04-26	Added file that checks how much time is added to a loop's runtime by print st...	Zachary Sloan
2013-04-24	Began writing code that writes some objects used in LMM to redis	Zachary Sloan
2013-04-23	Created file correlation_plot.py for the correlation scatterplot	Zachary Sloan
2013-04-19	Fixed the issue with the x-axis coordinates for marker regression plot	Zachary Sloan
2013-04-18	The plink_input is split into chunks that are stored in temp_data, but	Zachary Sloan
2013-04-18	LMM code now reads in gzipped pickled plink snp iterator object	Zachary Sloan
2013-04-18	input file is now loaded by pickle	Zachary Sloan
2013-04-17	Created file with pickled SNPIterator (from input.py) data	Zachary Sloan
2013-04-17	Added a benchmark for running the chunks code on the list of snps	Zachary Sloan
2013-04-17	Renamed chunk_test.py to chunks.py	Zachary Sloan
2013-04-17	Updated chunk_test.py	Zachary Sloan
2013-04-17	Added chunk_test.py which compared my/ and sam's split into	Zachary Sloan
2013-04-17	Wrote code that tests the effectiveness of the function that divides a	Zachary Sloan
2013-04-17	Fixed small issue with the divide_into_chunks function	Zachary Sloan
2013-04-16	Wrote functions that divide a list into a specified number of chunks	Zachary Sloan
2013-04-16	Checking in before making some changes	Zachary Sloan
2013-04-16	Put most of the code calculating human association statistics in	Zachary Sloan
2013-04-09	Nick's code works fine with human data	Zachary Sloan
2013-04-05	Loading bar now correctly shows the time to completion	Zachary Sloan
2013-04-05	Got Nick's code working with the MDP datasets under the BXD group,	Zachary Sloan
2013-04-02	Finished adding code that uses the plink genotype data if	Zachary Sloan
2013-04-02	pylmm code is running for human data (plink .bed genotype files)	Zachary Sloan
2013-03-28	quick_search_table.py seems to be running OK for the PublishXRef	Zachary Sloan
2013-03-26	Just checking in code while in the process of trying to get	Zachary Sloan
2013-03-22	Removed zach_settings.py from git tracking	Zachary Sloan
2013-03-21	Did some work towards getting Nick's code working with our plink	Zachary Sloan
2013-03-19	In the process of trying to use Nick's pylmmKinship.py code to	Zachary Sloan
2013-03-19	Added Nick's input.py file which uses plink .ped files as input	Zachary Sloan
2013-03-08	Caching is working for marker regression but really slowly	Zachary Sloan
2013-03-08	Refactored GWAS function in lmm.py	Zachary Sloan
2013-03-07	Progress bar is now completely working	Zachary Sloan
2013-03-07	Created file temp_data to store data related to progress	Zachary Sloan
2013-03-06	Stored percent of calculate_kinship function completion in	Zachary Sloan
2013-02-28	Added benchmark.py that compares the time of various operations	Zachary Sloan
2013-02-21	Add my_pylmm package	Zachary Sloan
2013-02-13	Got results displaying for BXD and fixed genofile_parser.py to work	Zachary Sloan
2013-02-12	Edited marker_regression.py and data_set.py to store the p-values	Zachary Sloan
2013-02-08	Converted .geno files to json files and wrote code in marker_regression.py	Zachary Sloan
2013-02-07	Added code to marker_regression.py that creates the numpy arrays to	Zachary Sloan
2013-02-06	Edited genofile_parser.py to go through all genofiles and convert	Zachary Sloan