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2015-03-12Check GPjotr Prins
2015-03-12Debug infoPjotr Prins
2015-03-12process_plink.py: remove unused filePjotr Prins
2015-03-11runlmm.py: messagePjotr Prins
2015-03-11Adding multi-core kinship.pyPjotr Prins
2015-03-11lmm.py: change message on running from CLIPjotr Prins
2015-03-11& Added testing option, now the results matchPjotr Prins
2015-03-10NormalisationPjotr Prins
2015-03-10lmm.py: debugging outputPjotr Prins
2015-03-10Missing genotypes and normalizePjotr Prins
2015-03-10Populationg Redis from TSV dataPjotr Prins
2015-03-10Refactored tsvreader outPjotr Prins
2015-03-10Factoring out tsvreadersPjotr Prins
2015-03-10convertlmm.py: add SNP namesPjotr Prins
2015-03-10Turn HAB encoding into pylmm genotypingPjotr Prins
2015-03-09Add HAB encodingPjotr Prins
2015-03-09Write genotype file non-transposedPjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09plink: missing values in bimPjotr Prins
2015-03-09Now we can use print in lamdbaPjotr Prins
2015-03-09Not using numpy - is part of the callerPjotr Prins
2015-03-09plink: no need to know the number of SNPs, but you need INDsPjotr Prins
2015-03-09plink supportPjotr Prins
2015-03-09convertlmm.py: options.genoPjotr Prins
2015-03-09convertlmm.py: plink supportPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-07Write phenotypesPjotr Prins
2015-03-07Kinship converterPjotr Prins
2015-03-05Kinship file format support (reader and writer)Pjotr Prins
2015-03-05Convert textual kinship filePjotr Prins
2015-03-05Helpers to split out functionalityPjotr Prins
2015-03-05Removed execution flag x from filesPjotr Prins
2015-03-03fix printPjotr Prins
2015-03-01WarningPjotr Prins
2015-03-01Add warning to running lmm.py from the command linePjotr Prins
2015-02-28Started adaptations for introducing multi-core versionPjotr Prins
2015-02-20Splitting out handlersPjotr Prins
2015-02-20Moved pylmm scripts that are not used by GN2Pjotr Prins
2015-02-20Split out behaviour for calling lmm from GN2 or (testing) CLIPjotr Prins
2015-02-11Added pop-up for empty searchesZachary Sloan
Replaced pyLMM code with one version of Pyotr's updated faster code Began fixing search to work for combined searches Made login screen look better and fixed for empty fields
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix codeZachary Sloan
Improved the "scatterplot matrix" feature on the trait page so that it matches the chosen trait against every selected trait
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
adding the correlation matrix page
2014-03-26Got anonymous collections working correctlyZachary Sloan
Got results for the HSNIH and CANDLE marker regression pages (still some issues with the manhattan plot)
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-24Chromosome zoom is working for the marker regression manhattan plotZachary Sloan
and results show up correctly in the table again
2014-01-30The calculations for the manhattan plot are now run from the commandZachary Sloan
line as a background process, allowing multiple to be run at the same time without the time increasing.
2014-01-30Most of the work is done towards running lmm.py from the command lineZachary Sloan
and storing the results in redis
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