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AgeCommit message (Expand)Author
2015-03-12Check GPjotr Prins
2015-03-12Debug infoPjotr Prins
2015-03-12process_plink.py: remove unused filePjotr Prins
2015-03-11runlmm.py: messagePjotr Prins
2015-03-11Adding multi-core kinship.pyPjotr Prins
2015-03-11lmm.py: change message on running from CLIPjotr Prins
2015-03-11& Added testing option, now the results matchPjotr Prins
2015-03-10NormalisationPjotr Prins
2015-03-10lmm.py: debugging outputPjotr Prins
2015-03-10Missing genotypes and normalizePjotr Prins
2015-03-10Populationg Redis from TSV dataPjotr Prins
2015-03-10Refactored tsvreader outPjotr Prins
2015-03-10Factoring out tsvreadersPjotr Prins
2015-03-10convertlmm.py: add SNP namesPjotr Prins
2015-03-10Turn HAB encoding into pylmm genotypingPjotr Prins
2015-03-09Add HAB encodingPjotr Prins
2015-03-09Write genotype file non-transposedPjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09Write genotype file (start)Pjotr Prins
2015-03-09plink: missing values in bimPjotr Prins
2015-03-09Now we can use print in lamdbaPjotr Prins
2015-03-09Not using numpy - is part of the callerPjotr Prins
2015-03-09plink: no need to know the number of SNPs, but you need INDsPjotr Prins
2015-03-09plink supportPjotr Prins
2015-03-09convertlmm.py: options.genoPjotr Prins
2015-03-09convertlmm.py: plink supportPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-09Parse new phenotype formatPjotr Prins
2015-03-07Write phenotypesPjotr Prins
2015-03-07Kinship converterPjotr Prins
2015-03-05Kinship file format support (reader and writer)Pjotr Prins
2015-03-05Convert textual kinship filePjotr Prins
2015-03-05Helpers to split out functionalityPjotr Prins
2015-03-05Removed execution flag x from filesPjotr Prins
2015-03-03fix printPjotr Prins
2015-03-01WarningPjotr Prins
2015-03-01Add warning to running lmm.py from the command linePjotr Prins
2015-02-28Started adaptations for introducing multi-core versionPjotr Prins
2015-02-20Splitting out handlersPjotr Prins
2015-02-20Moved pylmm scripts that are not used by GN2Pjotr Prins
2015-02-20Split out behaviour for calling lmm from GN2 or (testing) CLIPjotr Prins
2015-02-11Added pop-up for empty searchesZachary Sloan
2014-07-09Updated coffeescript, svg export working fine, interval mapping zoom workingZachary Sloan
2014-06-25Added Karl's correlation matrix codeZachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA andZachary Sloan
2014-03-26Got anonymous collections working correctlyZachary Sloan
2014-02-28Made some changes/comments to Lei's load_genotypes.py fileZachary Sloan
2014-02-24Chromosome zoom is working for the marker regression manhattan plotZachary Sloan
2014-01-30The calculations for the manhattan plot are now run from the commandZachary Sloan
2014-01-30Most of the work is done towards running lmm.py from the command lineZachary Sloan
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