| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2018-01-12 | Add elasticsearch_tools module | Muriithi Frederick Muriuki | |
| * Collect variables and functions for using the elasticsearch system in a separate module. | |||
| 2018-01-12 | Add client_id and client_secret configurations | Muriithi Frederick Muriuki | |
| * Provide the OAuth2 client_id and client_secret values in configuration variables. | |||
| 2018-01-10 | Add configuration variables for external services | Muriithi Frederick Muriuki | |
| * Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. | |||
| 2017-12-20 | tools: find path for JS and gemma_wrapper | Pjotr Prins | |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins | |
| 2017-09-04 | gemma-wrapper: find binary in profile | Pjotr Prins | |
| 2017-06-12 | Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMAND | Pjotr Prins | |
| 2017-06-02 | settings: do not enforce JS paths | Pjotr Prins | |
| 2017-05-31 | JS_GUIX_PATH may not be there | Pjotr Prins | |
| 2017-05-31 | JS module handling | Pjotr Prins | |
| 2017-05-21 | Merge from the diet branch. | Pjotr Prins | |
| * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile | |||
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data) | zsloan | |
| Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens | |||
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input ↵ | zsloan | |
| files and how it writes the phenotype file) Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results | |||
| 2016-10-11 | Merge branch 'pjotr-gn2' into testing | Pjotr Prins | |
| 2016-10-09 | Add version information | Pjotr Prins | |
| 2016-10-07 | Make sure JS path exists | Pjotr Prins | |
| 2016-10-07 | Changed error output | Pjotr Prins | |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR | Pjotr Prins | |
| Throw error when TMPDIRs are not writable | |||
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins | |
| 2016-10-05 | print statements should be logger | Pjotr Prins | |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins | |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins | |
| 2016-10-02 | Errors: added time stamps in UTC | Pjotr Prins | |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins | |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins | |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver ↵ | Pjotr Prins | |
| settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | |||
| 2016-08-16 | Users can now select specific traits from collection when using collection ↵ | zsloan | |
| tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc). | |||
| 2016-06-26 | gn_server: introduced one new query to fetch a dataset record and force ↵ | Pjotr Prins | |
| fetch1 to return a tuple | |||
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins | |
| 2016-06-23 | Log: SQL queries | Pjotr Prins | |
| 2016-06-23 | Logger: improved logging | Pjotr Prins | |
| 2016-06-23 | Logger: prettify | Pjotr Prins | |
| 2016-06-23 | Settings: add GN_SERVER_URL | Pjotr Prins | |
| 2016-06-23 | Add warnings for adding MySQLdb cursor | Pjotr Prins | |
| 2016-06-21 | log: replace print statements | Pjotr Prins | |
| 2016-06-21 | logger: add format field (reserve) | Pjotr Prins | |
| 2016-06-21 | Use logger also for benchmarking | Pjotr Prins | |
| 2016-06-21 | Logger: switch for logging SQLALCHEMY | Pjotr Prins | |
| 2016-06-21 | Benchmarking: allow output select with LOG_BENCH | Pjotr Prins | |
| 2016-06-21 | Logger: SQL | Pjotr Prins | |
| 2016-06-19 | gn_server: Species info can be fetched from gn_server | Pjotr Prins | |
| 2016-06-19 | gn_server: SQL handling | Pjotr Prins | |
| 2016-06-19 | Logger: started logging SQL | Pjotr Prins | |
| 2016-06-19 | logger: adding functionality for SQL | Pjotr Prins | |
| views.py: simplified code | |||
| 2016-06-19 | Renamed settings so they are grouped together | Pjotr Prins | |
| 2016-06-18 | Logger: changed level | Pjotr Prins | |
| 2016-06-18 | Logger: create stub so we can have multiple arguments to log functions | Pjotr Prins | |
| 2016-06-18 | Logging settings | Pjotr Prins | |
| 2016-06-18 | Documented logger | Pjotr Prins | |
| 2016-06-18 | Logger: more info | Pjotr Prins | |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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