| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-08-08 | Create new utility module for drawing | Muriithi Frederick Muriuki | |
| * wqflask/utility/pillow_utils.py: Create a module to hold some utility functions for drawing with Pillow. Initialise the module with a function to draw rotated text. | |||
| 2020-08-08 | Fix font paths | Muriithi Frederick Muriuki | |
| * wqflask/utility/Plot.py: Update font paths. * wqflask/fonts/ttf: Update font files. | |||
| 2020-08-08 | Migrate code from Piddle to Pillow | Muriithi Frederick Muriuki | |
| * wqflask/wqflask/marker_regression/display_mapping_results.py: Add font files (DisplayMappingResults): Update the code from the Piddle way of things to the Pillow way of things, for example, replace: - pid.drawRect(...) with im_drawer.rectangle(...) - pid.drawString(...) with im_drawer.text(...) - pid.drawPolygon(...) with im_drawer.polygon(...) etc. * wqflask/utility/Plot.py: Migrate code from the older, unsupported Piddle to the newer Pillow library. | |||
| 2020-07-29 | Fixed error that occured for new resources in check_admin | zsloan | |
| * wqflask/utility/authentication_tools.py: the code forgot to get resource_info when a resource wasn't in Redis yet, causing an error when it was referenced, so I added a line getting the resource info (and also a couple comments for other lines related to authentication) | |||
| 2020-07-25 | The variable is never defined, so let's default to "none" | Pjotr Prins | |
| 2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests | zsloan | |
| Build/add tests | |||
| 2020-07-24 | Revert "Add work-around for failed imports in unittest" | BonfaceKilz | |
| This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. | |||
| 2020-07-24 | Add work-around for failed imports in unittest | BonfaceKilz | |
| * wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` | |||
| 2020-07-24 | Apply autopep-8 | BonfaceKilz | |
| * wqflask/utility/formatting.py: apply it | |||
| 2020-07-24 | Add zero to num_repr dictionary | BonfaceKilz | |
| * wqflask/utility/formatting.py(numify): Update `num_repr` to have a zero | |||
| 2020-07-24 | Remove redundant variable | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values_with_values): Remove `num_overlap` | |||
| 2020-07-24 | Remove unused assert | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values): At no one point will that assert be hit | |||
| 2020-07-24 | Remove unused doc-tests | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py: Delete doc-test | |||
| 2020-07-24 | Simplify normalize_values | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values): Replace loop with zip form | |||
| 2020-07-24 | Remove unused doc-tests | BonfaceKilz | |
| * wqflask/utility/chunks.py: Remove test code from module | |||
| 2020-07-24 | Revert "Add work-around for failed imports in unittest" | BonfaceKilz | |
| This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. | |||
| 2020-07-24 | Add work-around for failed imports in unittest | BonfaceKilz | |
| * wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` | |||
| 2020-07-22 | It should add new resources to Redis automatically now | zsloan | |
| 2020-07-16 | Expose elastic-search variables for tests to pass | BonfaceKilz | |
| 2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan | |
| 2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ↵ | zsloan | |
| where a trait is authenticated twice | |||
| 2020-06-24 | Temporary partial fix to issue of resources without info; need to add ↵ | zsloan | |
| something that automatically inserts resources with default privileges | |||
| 2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) ↵ | zsloan | |
| and also simplified the check_owner_or_admin function a little | |||
| 2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan | |
| 2020-06-17 | A user's id is now set as a parameter if it doesn't already existauthentication_test | zsloan | |
| 2020-06-17 | Adding all the authentication stuff | zsloan | |
| 2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan | |
| 2020-06-04 | Really should have split this into many more commits: | zsloan | |
| - Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code | |||
| 2020-05-28 | Added lines calling proxy for publish datasets + added some resource redis ↵ | zsloan | |
| queries and a missing import for the hmac functions | |||
| 2020-05-12 | Merging Danny's changes and Bonface's changes to js imports | zsloan | |
| 2020-05-12 | Added change for F2s in r/qtl and fixed minor issue in save_user in redis_tools | zsloan | |
| 2020-05-07 | Committing current progress on group manager + a minor fix in dataset.py | zsloan | |
| 2020-05-06 | Commiting a few minor changes plus returning rqtl_mapping.py to the same as ↵ | zsloan | |
| on testing branch before merging Danny's changes and testing them | |||
| 2020-05-06 | Replace CSS dependencies for datatables | BonfaceKilz | |
| 2020-04-26 | Merge master and testingmaster | Pjotr Prins | |
| 2020-04-24 | Replaced hard-coded instances of GN2 urls with ones pulled from settings file | zsloan | |
| 2020-04-22 | Fixed a variety of issues related to users registering and logging in | zsloan | |
| GN2 should now work when Redis is empty | |||
| 2020-04-16 | Many changes, including: | zsloan | |
| - Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection" | |||
| 2020-04-03 | Added option to select cofactors from collection for R/qtl | zsloan | |
| Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa | |||
| 2020-03-27 | Added integration for using RData files with R/qtl, plus some other changes ↵ | zsloan | |
| to how it decides which mapping methods to display on the trait page | |||
| 2020-03-10 | Fixed issue that caused some problems when verifying hmac | zsloan | |
| 2020-03-09 | I think this should complete consolidating all the collections code. | zsloan | |
| 2020-03-03 | Missed one more reference in helper_functions | zsloan | |
| 2020-03-03 | was missing a couple files in last commit | zsloan | |
| 2020-03-03 | Refactored all the anonymous (not logged-in) user stuff so that both ↵ | zsloan | |
| logged-in and anonymous users share the same code | |||
| 2020-02-12 | Fixed issue that broke some logins with the new redis user code | zsloan | |
| 2020-01-23 | Forgot to commit new file containing Redis functions | zsloan | |
| 2019-10-18 | Fixed issue with collections ordering | zsloan | |
| 2019-10-08 | Fixed serious issue that caused output to be wrong for new reaper mapping | zsloan | |
| Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart | |||
| 2019-09-24 | Fixed issue that caused GEMMA to not work with genotype files without cM, ↵ | zsloan | |
| though this issue still needs to be dealt with to get the new qtlreaper working | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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