| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2014-02-27 | Began working on a TraitCollection.py file that will contain both the | Zachary Sloan | |
| object for logged in user collections and collections created by anonymous users. | |||
| 2013-10-17 | Sample objects are now passed to js_data for drawing the correlation | Lei Yan | |
| scatter plot | |||
| 2013-10-11 | Merge /home/sam/gene | Lei Yan | |
| 2013-10-07 | Worked on logins, session_ids, flash messages, etc. | Sam | |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork | Lei Yan | |
| Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | |||
| 2013-07-19 | Finished integrating code that reads sample list from geno files | Zachary Sloan | |
| withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page | |||
| 2013-07-12 | Rewrote code related to getting the tissue correlation column to display | Lei Yan | |
| Created new files for mrna assay tissue data and commonly used db query related functions | |||
| 2013-06-20 | Added file corr_result_helpers.py that includes the function that | Zachary Sloan | |
| normalizes the lists of sample values | |||
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask | Zachary Sloan | |
| Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page | |||
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a | Lei Yan | |
| dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | |||
| 2013-05-23 | Lots of changes around users | Sam | |
| 2013-04-23 | Created file correlation_plot.py for the correlation scatterplot | Zachary Sloan | |
| Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | |||
| 2013-04-18 | The plink_input is split into chunks that are stored in temp_data, but | Zachary Sloan | |
| we might decide to store it differently | |||
| 2013-04-17 | Created file with pickled SNPIterator (from input.py) data | Zachary Sloan | |
| for HLC datasets Still need to read in file | |||
| 2013-04-05 | Loading bar now correctly shows the time to completion | Zachary Sloan | |
| and the code seems to run correctly | |||
| 2013-03-12 | Got cashing working with pickle | Zachary Sloan | |
| 2013-03-07 | Have first 45% of progress bar working | Zachary Sloan | |
| Changed "threaded" to True in runserver.py; this fixed issue related to getting progress bar to work | |||
| 2013-03-07 | Created file temp_data to store data related to progress | Zachary Sloan | |
| of the marker regression calculations Storing progress of kinship matrix calculation in variable as portion of 45 (the rough percent of total marker regression calculation time | |||
| 2013-02-28 | Updated benchmark.py to aggregate run times when you run the | Zachary Sloan | |
| operation(s) multiple times | |||
| 2013-02-28 | Added benchmark.py that compares the time of various operations | Zachary Sloan | |
| and gives a report with the percent of total computation time each takes | |||
| 2013-02-19 | Made lines for manhattan plot proportional to chromosome lengths | Zachary Sloan | |
| 2013-01-31 | Changed reference to 'dataset_name' in keywords to 'dataset' to get | Zachary Sloan | |
| page to work, but will change all references to the dataset name to 'dataset_name' in future to avoid confusion between the dataset name and the actual dataset object | |||
| 2013-01-22 | Pushed through a few errors in getting the correlation page running | Zachary Sloan | |
| 2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py | Zachary Sloan | |
| Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places | |||
| 2012-09-27 | Worked on getting attributes in the SampleList object to display data ↵ | Zachary Sloan | |
| properly, changed SampleList from an object list to object | |||
| 2012-09-26 | Worked on implementing the extra attributes feature on the trait data page | Zachary Sloan | |
| 2012-08-29 | Fixed so that outliers are now correctly highlighted | Zachary Sloan | |
| 2012-08-28 | Various changes related to the webqtlCaseData object and the way ↵ | Zachary Sloan | |
| values/variances/num_cases are called in DataEditingPage.py | |||
| 2012-06-22 | Working my way through getting the review and edit data dynamically ↵ | Sam Ockman | |
| generated in Jinja2 | |||
| 2012-06-05 | Ran reindent.py recursively on wqflask directory | Sam Ockman | |
| 2012-06-02 | Coming along in trying to get trait page working | Sam Ockman | |
| 2012-05-24 | Trying to get stuff working under new structure | Sam Ockman | |
 |
index : genenetwork2 | |
| GeneNetwork (2nd generation) |
| aboutsummaryrefslogtreecommitdiff |