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2021-05-08utility: startup_config: Use python3 f-stringsBonfaceKilz
2021-05-08utility: startup_config: Break up long import statementBonfaceKilz
2021-05-08utility: startup_config: Remove dead commentsBonfaceKilz
2021-05-07Fixed issue that caused /submit_trait page to not load properlyzsloan
2021-04-30autopep8: Run autopep8 100 times with target rules...Rules used are: E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,E242, E251,E252,E26,E265,E266,E27,E301,E302,E303,E304,E305,E306, E401,E501,E70,E701,W291,W292,W293,W391,W504,E101,E11,E121, E122,E123,E124,E125,E126,E127,E128,E129,E131,E133 BonfaceKilz
2021-04-30autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133BonfaceKilz
2021-04-30autopep8: Fix E101, E11BonfaceKilz
2021-04-30autopep8: Fix W504BonfaceKilz
2021-04-30autopep8: Fix W291, W292, W293, W391BonfaceKilz
2021-04-30autopep8: Fix E70 and E701BonfaceKilz
2021-04-30autopep8: Fix E501BonfaceKilz
2021-04-30autopep8: Fix E301,E302,E303,E304,E305,E306BonfaceKilz
2021-04-30autopep8: Fix E20-E27...Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3 BonfaceKilz
2021-04-29Merge branch 'testing' into Feature/Add-upload-data-formsBonfaceKilz
2021-04-29Run `sed -i 's/(object)//g'`...See: https://is.gd/pL7IJF Ran: find . \( -type d -name .git -prune \) -o -type f -print0 | xargs -0 sed -i 's/(object)//g' BonfaceKilz
2021-04-23Apply PEP-8BonfaceKilz
2021-04-23Move looped sql query into one statement in "get_species_groups"...It's in-efficient to have a sql query executed in a loop. As data grows, the query becomes slower. It's better to let sql handle such queries. BonfaceKilz
2021-04-23Remove stale commentsBonfaceKilz
2021-04-19Specify only getting the first two items after splitting the trait/dataset in...zsloan
2021-03-16Fixed encoding in load_json_from_redis to account for the first that column v...zsloan
2021-03-16Fixed encoding to make get_user_groups work properly, since the user IDs for ...zsloan
2021-03-16Removed unnecessary encoding of user_id from authentication_tools.pyzsloan
2021-02-18Remove the deocde since it was throwing an errorzsloan
2021-02-18Changed authentication_tools.py to account for encoding str as bytes and deal...zsloan
2021-02-17Fixed error caused by user IDs being encoded as byteszsloan
2021-01-06replace vars with vars_obj which is a function name in pythonAlexanderkabui
2020-12-18Added redirect_uri to the ORCID_AUTH_URL since it wasn't working due to missi...zsloan
2020-11-02Created function for encoding the column value as bytes when fetching from th......* wqflask/utility/redis_tools.py - Created function load_json_from_redis that encodes the key (column_value) when fetching a value from the JSON pulled from Redis zsloan
2020-10-28Use latin-1 encoding when converting hmac secret to bytes...* wqflask/utility/hmac.py (hmac_creation): Use latin-1 when serializing the hmac secret. This ensures that the behaviour of *verify_cookie* remains the same as in the python2 tip. BonfaceKilz
2020-09-26Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-09-18Apply pep8 formattingBonfaceKilz
2020-09-17Replace string arguments to "hmac.new" with bytearray...Same as: https://github.com/genenetwork/genenetwork2/pull/422/commits/46443ec8d2cdfd7c60358a889d90a90e4f7daaf4 BonfaceKilz
2020-09-17Apply pep8...* wqflask/base/trait.py: Apply pep8. * wqflask/utility/authentication_tools.py: Ditto. BonfaceKilz
2020-09-17Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-09-17Apply pep8...* wqflask/utility/hmac.py: Apply pep8 and fix typo. BonfaceKilz
2020-09-16Apply pep8...* wqflask/utility/authentication_tools.py: Apply pep8 formatting to file. BonfaceKilz
2020-09-16Remove unnecessary if branch...* wqflask/utility/authentication_tools.py (check_resource_availability): Combine if statements into one boolean check in one if branch. BonfaceKilz
2020-08-31Remove typo at beginning of line...* wqflask/utility/authentication_tools.py: Remove accidental char at beginning of line. BonfaceKilz
2020-08-31Fixed issue that was causing updating resource default privileges to not...work * wqflask/utility/redis_tools.py - There was an issue where resources wouldn't be updated if they already existed. This is because the code didn't yet account for the "update" tag (that is meant to give the option of preventing updating resources when running the script to enter all resources into Redis). I changed the logic to add a resource if "update" is True or the resource doesn't already exist (so it won't if update is False and the resource exists). zsloan
2020-08-31Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-08-29Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB * wqflask/utility/authentication_tools.py - Changed get_group_code to return an empty string instead of None if InbredSetCode doesn't exist for a dataset group * wqflask/wqflask/views.py - Changed zipped export filename to "export_(datetime)" instead of "collection_(datetime)" since this export can occur from both the collection page and the global search page zsloan
2020-08-27Add check for empty group_code when adding a new resource...* wqflask/utility/authentication_tools.py(add_new_resource): If group_code is "None", an error is thrown when you try to: `group_code + "_" + str(trait_id)` BonfaceKilz
2020-08-27Replace string arguments to "hmac.new" with bytearray...See: <https://stackoverflow.com/questions/31848293/python3-and-hmac-how-to-handle-string-not-being-binary> BonfaceKilz
2020-08-27Add global method to convert binary string to plain string...* wqflask/utility/db_tools.py: escape_string returns a binary string which introduces a bug when composing sql query string. The escaped strings have to be converted to plain text. BonfaceKilz
2020-08-27Replace "string.split" & "string.join" with python's inbuilt methodsBonfaceKilz
2020-08-26Remove "from __future__ import new_feature" statements...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-future> BonfaceKilz
2020-08-26Replace calls to "basestring with "str""...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-basestring> BonfaceKilz
2020-08-26Update corestats import...* wqflask/utility/Plot.py: import corestats from the utility module. BonfaceKilz
2020-08-26Merge branch 'testing' into build/python3-migrationBonfaceKilz
2020-08-24Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is does not have py3 support so it's important to remove references to it. BonfaceKilz
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