| Age | Commit message (Expand) | Author |
|---|---|---|
| 2015-05-11 | Moving pylmm out of the tree | pjotrp |
| 2014-08-12 | Fixed the scrollable data tables for the show trait page...Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function | Zachary Sloan |
| 2014-07-18 | Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap | Zachary Sloan |
| 2014-05-05 | Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page | Zachary Sloan |
| 2014-02-27 | Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. | Zachary Sloan |
| 2013-10-17 | Sample objects are now passed to js_data for drawing the correlation...scatter plot | Lei Yan |
| 2013-10-11 | Merge /home/sam/gene | Lei Yan |
| 2013-10-07 | Worked on logins, session_ids, flash messages, etc. | Sam |
| 2013-09-13 | Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py | Lei Yan |
| 2013-07-19 | Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page | Zachary Sloan |
| 2013-07-12 | Rewrote code related to getting the tissue correlation column to display...Created new files for mrna assay tissue data and commonly used db query related functions | Lei Yan |
| 2013-06-20 | Added file corr_result_helpers.py that includes the function that...normalizes the lists of sample values | Zachary Sloan |
| 2013-06-19 | Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page | Zachary Sloan |
| 2013-06-13 | Fixed issue where too much memory was used as a result of creating a...dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields | Lei Yan |
| 2013-05-23 | Lots of changes around users | Sam |
| 2013-04-23 | Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py | Zachary Sloan |
| 2013-04-18 | The plink_input is split into chunks that are stored in temp_data, but...we might decide to store it differently | Zachary Sloan |
| 2013-04-17 | Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file | Zachary Sloan |
| 2013-04-05 | Loading bar now correctly shows the time to completion...and the code seems to run correctly | Zachary Sloan |
| 2013-03-12 | Got cashing working with pickle | Zachary Sloan |
| 2013-03-07 | Have first 45% of progress bar working...Changed "threaded" to True in runserver.py; this fixed issue related to getting progress bar to work | Zachary Sloan |
| 2013-03-07 | Created file temp_data to store data related to progress...of the marker regression calculations Storing progress of kinship matrix calculation in variable as portion of 45 (the rough percent of total marker regression calculation time | Zachary Sloan |
| 2013-02-28 | Updated benchmark.py to aggregate run times when you run the...operation(s) multiple times | Zachary Sloan |
| 2013-02-28 | Added benchmark.py that compares the time of various operations...and gives a report with the percent of total computation time each takes | Zachary Sloan |
| 2013-02-19 | Made lines for manhattan plot proportional to chromosome lengths | Zachary Sloan |
| 2013-01-31 | Changed reference to 'dataset_name' in keywords to 'dataset' to get...page to work, but will change all references to the dataset name to 'dataset_name' in future to avoid confusion between the dataset name and the actual dataset object | Zachary Sloan |
| 2013-01-22 | Pushed through a few errors in getting the correlation page running | Zachary Sloan |
| 2013-01-18 | Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places | Zachary Sloan |
| 2012-09-27 | Worked on getting attributes in the SampleList object to display data properl... | Zachary Sloan |
| 2012-09-26 | Worked on implementing the extra attributes feature on the trait data page | Zachary Sloan |
| 2012-08-29 | Fixed so that outliers are now correctly highlighted | Zachary Sloan |
| 2012-08-28 | Various changes related to the webqtlCaseData object and the way values/varia... | Zachary Sloan |
| 2012-06-22 | Working my way through getting the review and edit data dynamically generated... | Sam Ockman |
| 2012-06-05 | Ran reindent.py recursively on wqflask directory | Sam Ockman |
| 2012-06-02 | Coming along in trying to get trait page working | Sam Ockman |
| 2012-05-24 | Trying to get stuff working under new structure | Sam Ockman |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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