| Age | Commit message (Expand) | Author |
|---|
| 2018-03-26 | Add more configuration variables....* Add configurations for elasticsearch and github.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add save_user() function...* On successful login via OAuth2, save the details of the user in
elasticsearch store, to avoid hitting the external provider for the
basic details.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add elasticsearch_tools module...* Collect variables and functions for using the elasticsearch system in
a separate module.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add client_id and client_secret configurations...* Provide the OAuth2 client_id and client_secret values in configuration
variables.
| Muriithi Frederick Muriuki |
| 2018-03-26 | Add configuration variables for external services...* Add configuration variables for GitHub and ORCID which will be used by
the system to allow users to login.
| Muriithi Frederick Muriuki |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins |
| 2017-12-20 | tools: find path for JS and gemma_wrapper | Pjotr Prins |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins |
| 2017-09-04 | gemma-wrapper: find binary in profile | Pjotr Prins |
| 2017-06-12 | Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMAND | Pjotr Prins |
| 2017-06-02 | settings: do not enforce JS paths | Pjotr Prins |
| 2017-05-31 | JS_GUIX_PATH may not be there | Pjotr Prins |
| 2017-05-31 | JS module handling | Pjotr Prins |
| 2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings
- better detection of Guix
- removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS
- removing some default settings, such as PYLMM_COMMAND
- rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY
- added GUIX_JS_PATH for JS modules
* Added documentation on installing binary GN2
* Updated Twitter board to latest version in Guix - it had broken
* Updated many tools in the latest Guix profile
| Pjotr Prins |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits
Fixed location of global search bar to work with wider screens
| zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p)
Updated the style of the trait sample data table in the trait page
Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs)
Updated dataset menu json file
Added option to show and hide columns to regular search page using colVis
Changed regular and global search result table styles/column widths
Began work on user trait submission code (not working yet though)
Began work on static loading page for mapping results
| zsloan |
| 2016-10-11 | Merge branch 'pjotr-gn2' into testing | Pjotr Prins |
| 2016-10-09 | Add version information | Pjotr Prins |
| 2016-10-07 | Make sure JS path exists | Pjotr Prins |
| 2016-10-07 | Changed error output | Pjotr Prins |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable
| Pjotr Prins |
| 2016-10-06 | Logger: add more granular debug messages | Pjotr Prins |
| 2016-10-05 | print statements should be logger | Pjotr Prins |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins |
| 2016-10-02 | Errors: added time stamps in UTC | Pjotr Prins |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with
./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
| Pjotr Prins |
| 2016-08-16 | Users can now select specific traits from collection when using collection to......To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url
Duplicate traits can no longer by added to collections
Fixed the digits for a few table columns in collection (additive effect, etc).
| zsloan |
| 2016-06-26 | gn_server: introduced one new query to fetch a dataset record and force fetch... | Pjotr Prins |
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins |
| 2016-06-23 | Log: SQL queries | Pjotr Prins |
| 2016-06-23 | Logger: improved logging | Pjotr Prins |
| 2016-06-23 | Logger: prettify | Pjotr Prins |
| 2016-06-23 | Settings: add GN_SERVER_URL | Pjotr Prins |
| 2016-06-23 | Add warnings for adding MySQLdb cursor | Pjotr Prins |
| 2016-06-21 | log: replace print statements | Pjotr Prins |
| 2016-06-21 | logger: add format field (reserve) | Pjotr Prins |
| 2016-06-21 | Use logger also for benchmarking | Pjotr Prins |
| 2016-06-21 | Logger: switch for logging SQLALCHEMY | Pjotr Prins |
| 2016-06-21 | Benchmarking: allow output select with LOG_BENCH | Pjotr Prins |
| 2016-06-21 | Logger: SQL | Pjotr Prins |
| 2016-06-19 | gn_server: Species info can be fetched from gn_server | Pjotr Prins |
| 2016-06-19 | gn_server: SQL handling | Pjotr Prins |
| 2016-06-19 | Logger: started logging SQL | Pjotr Prins |
| 2016-06-19 | logger: adding functionality for SQL...views.py: simplified code
| Pjotr Prins |
| 2016-06-19 | Renamed settings so they are grouped together | Pjotr Prins |
| 2016-06-18 | Logger: changed level | Pjotr Prins |
