| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2016-06-21 | Logger: switch for logging SQLALCHEMY | Pjotr Prins | |
| 2016-06-21 | Benchmarking: allow output select with LOG_BENCH | Pjotr Prins | |
| 2016-06-21 | Logger: SQL | Pjotr Prins | |
| 2016-06-19 | gn_server: Species info can be fetched from gn_server | Pjotr Prins | |
| 2016-06-19 | gn_server: SQL handling | Pjotr Prins | |
| 2016-06-19 | Logger: started logging SQL | Pjotr Prins | |
| 2016-06-19 | logger: adding functionality for SQL | Pjotr Prins | |
| views.py: simplified code | |||
| 2016-06-19 | Renamed settings so they are grouped together | Pjotr Prins | |
| 2016-06-18 | Logger: changed level | Pjotr Prins | |
| 2016-06-18 | Logger: create stub so we can have multiple arguments to log functions | Pjotr Prins | |
| 2016-06-18 | Logging settings | Pjotr Prins | |
| 2016-06-18 | Documented logger | Pjotr Prins | |
| 2016-06-18 | Logger: more info | Pjotr Prins | |
| 2016-06-18 | Logger: introducing logging | Pjotr Prins | |
| 2016-06-18 | Logging: behaviours | Pjotr Prins | |
| 2016-06-18 | Logger: improving output | Pjotr Prins | |
| 2016-06-18 | Changed file permssions to non-executable | Pjotr Prins | |
| 2016-06-18 | Disable setting sys.paths | Pjotr Prins | |
| 2016-06-18 | Logger: introducing logging | Pjotr Prins | |
| 2016-06-17 | Conflict | Pjotr Prins | |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins | |
| 2016-06-16 | Introduce behaviour parameters to facilitate development | Pjotr Prins | |
| 2016-05-17 | Merge branch 'staging' of github.com:genenetwork/genenetwork2 | zsloan | |
| 2016-05-10 | Correlation successfully uses materialized views and parallel processing, ↵ | zsloan | |
| but for some reason is taking an immense amount of time so need to troubleshoot that Changed order of mapping options to display Interval Mapping first Changed some links to no longer open in new tab/window | |||
| 2016-04-20 | A few fixes to get the webserver running again | Pjotr Prins | |
| 2016-04-20 | Parsing the names of the individuals, and coding H as -999 | DannyArends | |
| 2016-04-20 | Adding the geno file parser from Zach | DannyArends | |
| 2016-04-20 | Show error when GENODIR is missing | Pjotr Prins | |
| 2016-04-20 | external program should fail on return value not zero | pjotrp | |
| 2016-04-20 | Minor fixes | pjotrp | |
| 2016-04-20 | [PATCH 042/100] Sanitizing locations | Pjotr Prins | |
| 2016-04-20 | [PATCH 041/100] Fixes for running tools | Pjotr Prins | |
| 2016-04-20 | -a | Pjotr Prins | |
| [PATCH 038/100] Fix compile errors | |||
| 2016-04-20 | [PATCH 037/100] WebQtlConfig: sanitizing naming and used vars | Pjotr Prins | |
| 2016-04-20 | Settled on the _COMMAND syntax over _RUN | pjotrp | |
| 2016-04-20 | [PATCH 033/100] Refactored file searching | Pjotr Prins | |
| 2016-04-20 | Fine tuning file locating | pjotrp | |
| 2016-04-20 | tools.py: add function locate_without_error | pjotrp | |
| 2016-04-20 | [PATCH 027/100] Introduce tools.locate | Pjotr Prins | |
| 2016-04-20 | [PATCH 026/100] Introducing cached values PYLMM_COMMAND, | Pjotr Prins | |
| GEMMA_COMMAND, PLINK_COMMAND and TEMPDIR | |||
| 2016-04-20 | Introducing TEMPDIR | pjotrp | |
| 2016-04-20 | [PATCH 024/100] Sanitizing file handling | Pjotr Prins | |
| 2016-04-20 | [PATCH 023/100] WIP fixing all paths | Pjotr Prins | |
| 2016-04-20 | [PATCH 018/100] Find external tools: refactored code to work with GNU Guix | Pjotr Prins | |
| 2016-04-07 | SNP Track option should now work for GN1 mapping figure | zsloan | |
| Fixed typo in show_trait html that caused the p-value slider to not work for correlations | |||
| 2016-04-06 | Permutations (suggestive/significant lines, legend, and histogram) should ↵ | zsloan | |
| now work for both R/qtl and qtl reaper mapping. Changed the logic for receiving permutation/bootstrap info when loading mapping page in different ways (from show_trait, from remapping, from clicking single chromosome) Added text below figure when Allele Effects selected/relevant | |||
| 2015-11-09 | Fixed issue that caused mapping to not work; for some reason the path to ↵ | zsloan | |
| pylmm was wrong | |||
| 2015-07-09 | Mapping methods now check for existing genotype files. | zsloan | |
| Currently we still usually get our samplelists from the genofile. This is dumb because it results in us having a bunch of "dummy" genofiles for certain data sets (seems to be mostly human ones). This means that checking for the genofile alone isn't enough to determine if a mapping method should exist for a given group I wrote some code that will instead get the samplelist from the plink .fam file for some of these groups/datasets (if the .fam file exists). Ideally I would like to remove all of the dummy .geno files, but we can't yet do so because it's currently the only place we seem to be storing the sample list for some groups. I also moved gemma into the plink directory to get it out of the git tree. Since it uses the same files as plink, it doesn't make sense for it to be in its own separate directory | |||
| 2015-06-29 | Merge pull request #72 from lomereiter/issue69 | zsloan | |
| Fixes #69 | |||
| 2015-06-29 | Merge pull request #77 from lomereiter/fix_sql | zsloan | |
| SQL security fixes | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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