| Age | Commit message (Expand) | Author |
|---|
| 2020-09-18 | Apply pep8 formatting | BonfaceKilz |
| 2020-09-17 | Apply pep8...* wqflask/utility/hmac.py: Apply pep8 and fix typo.
| BonfaceKilz |
| 2020-09-16 | Apply pep8...* wqflask/utility/authentication_tools.py: Apply pep8 formatting to
file.
| BonfaceKilz |
| 2020-09-16 | Remove unnecessary if branch...* wqflask/utility/authentication_tools.py
(check_resource_availability): Combine if statements into one boolean
check in one if branch.
| BonfaceKilz |
| 2020-08-31 | Fixed issue that was causing updating resource default privileges to not...work
* wqflask/utility/redis_tools.py - There was an issue where resources
wouldn't be updated if they already existed. This is because the code
didn't yet account for the "update" tag (that is meant to give the
option of preventing updating resources when running the script to enter
all resources into Redis). I changed the logic to add a resource if
"update" is True or the resource doesn't already exist (so it won't if
update is False and the resource exists).
| zsloan |
| 2020-08-29 | Fixed issue where exporting traits would throw an error if a dataset's...group didn't have an InbredSetCode set in the DB
* wqflask/utility/authentication_tools.py - Changed get_group_code to
return an empty string instead of None if InbredSetCode doesn't exist
for a dataset group
* wqflask/wqflask/views.py - Changed zipped export filename to
"export_(datetime)" instead of "collection_(datetime)" since this export
can occur from both the collection page and the global search page
| zsloan |
| 2020-08-24 | Remove unused imports...* wqflask/utility/Plot.py: Remove unused imports like "numarray". "numarray" is
does not have py3 support so it's important to remove references to it.
| BonfaceKilz |
| 2020-08-24 | The function draw_rotated_text_ was writing an image to /tmp, which GN2...user apparently doesn't have access to, so I replaced it with a link to
the dynamically set TEMPDIR
* wqflask/utility/pillow_utils.py - Replaced "/tmp/" in image location
with TEMPDIR
| zsloan |
| 2020-08-08 | Add draw_open_polygon() utility...* wqflask/utility/pillow_utils.py: New method.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Use draw_rotated_text()...Use the new draw_rotated_text() function to draw the text rotated as was
formerly done.
* wqflask/utility/Plot.py (plotBar): Use draw_rotated_text().
* wqflask/wqflask/marker_regression/display_mapping_results.py:
(DisplayMappingResults) Use draw_rotated_text().
| Muriithi Frederick Muriuki |
| 2020-08-08 | Create new utility module for drawing...* wqflask/utility/pillow_utils.py: Create a module to hold some utility
functions for drawing with Pillow. Initialise the module with a function to draw
rotated text.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Fix font paths...* wqflask/utility/Plot.py: Update font paths.
* wqflask/fonts/ttf: Update font files.
| Muriithi Frederick Muriuki |
| 2020-08-08 | Migrate code from Piddle to Pillow...* wqflask/wqflask/marker_regression/display_mapping_results.py: Add font files
(DisplayMappingResults): Update the code from the Piddle way of things to the
Pillow way of things, for example, replace:
- pid.drawRect(...) with im_drawer.rectangle(...)
- pid.drawString(...) with im_drawer.text(...)
- pid.drawPolygon(...) with im_drawer.polygon(...) etc.
* wqflask/utility/Plot.py: Migrate code from the older, unsupported Piddle to
the newer Pillow library.
| Muriithi Frederick Muriuki |
| 2020-07-29 | Fixed error that occured for new resources in check_admin...* wqflask/utility/authentication_tools.py: the code forgot to get
resource_info when a resource wasn't in Redis yet, causing an error when
it was referenced, so I added a line getting the resource info (and also
a couple comments for other lines related to authentication)
| zsloan |
| 2020-07-25 | The variable is never defined, so let's default to "none" | Pjotr Prins |
| 2020-07-24 | Merge pull request #409 from BonfaceKilz/Build/add-tests...Build/add tests | zsloan |
| 2020-07-24 | Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f.
| BonfaceKilz |
| 2020-07-24 | Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app`
and the gn2 script will use `from wqflask import app`
| BonfaceKilz |
| 2020-07-24 | Apply autopep-8...* wqflask/utility/formatting.py: apply it
| BonfaceKilz |
| 2020-07-24 | Add zero to num_repr dictionary...* wqflask/utility/formatting.py(numify): Update `num_repr` to have a zero
| BonfaceKilz |
| 2020-07-24 | Remove redundant variable...* wqflask/utility/corr_result_helpers.py(normalize_values_with_values):
Remove `num_overlap`
| BonfaceKilz |
| 2020-07-24 | Remove unused assert...* wqflask/utility/corr_result_helpers.py(normalize_values):
At no one point will that assert be hit
| BonfaceKilz |
| 2020-07-24 | Remove unused doc-tests...* wqflask/utility/corr_result_helpers.py: Delete doc-test
| BonfaceKilz |
| 2020-07-24 | Simplify normalize_values...* wqflask/utility/corr_result_helpers.py(normalize_values): Replace loop with
zip form
| BonfaceKilz |
| 2020-07-24 | Remove unused doc-tests...* wqflask/utility/chunks.py: Remove test code from module
| BonfaceKilz |
| 2020-07-24 | Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f.
| BonfaceKilz |
| 2020-07-24 | Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app`
and the gn2 script will use `from wqflask import app`
| BonfaceKilz |
| 2020-07-22 | It should add new resources to Redis automatically now | zsloan |
| 2020-07-16 | Expose elastic-search variables for tests to pass | BonfaceKilz |
| 2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan |
| 2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ... | zsloan |
| 2020-06-24 | Temporary partial fix to issue of resources without info; need to add somethi... | zsloan |
| 2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) and... | zsloan |
| 2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan |
| 2020-06-17 | A user's id is now set as a parameter if it doesn't already existauthentication_test | zsloan |
| 2020-06-17 | Adding all the authentication stuff | zsloan |
| 2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan |
| 2020-06-04 | Really should have split this into many more commits:...- Now use proxy to pull trait data and hide traits/results that the user
doesn't have view permission for
- Created a factory method for creating trait ob so it can return None
when user doesn't have view permissions (this is why such a large number
of files are changed)
- Added metadata to permutation export
- Added current group management code
- Added fixed password verification e-mail code
| zsloan |
| 2020-05-28 | Added lines calling proxy for publish datasets + added some resource redis qu... | zsloan |
| 2020-05-12 | Merging Danny's changes and Bonface's changes to js imports | zsloan |
| 2020-05-12 | Added change for F2s in r/qtl and fixed minor issue in save_user in redis_tools | zsloan |
| 2020-05-07 | Committing current progress on group manager + a minor fix in dataset.py | zsloan |
| 2020-05-06 | Commiting a few minor changes plus returning rqtl_mapping.py to the same as o... | zsloan |
| 2020-05-06 | Replace CSS dependencies for datatables | BonfaceKilz |
| 2020-04-26 | Merge master and testingmaster | Pjotr Prins |
| 2020-04-24 | Replaced hard-coded instances of GN2 urls with ones pulled from settings file | zsloan |
| 2020-04-22 | Fixed a variety of issues related to users registering and logging in...GN2 should now work when Redis is empty
| zsloan |
| 2020-04-16 | Many changes, including:...- Added permutation strata option for R/qtl
- Made a variety of aesthetic changes to collections-related pages
- Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages
- Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top
- The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
| zsloan |
| 2020-04-03 | Added option to select cofactors from collection for R/qtl...Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
| zsloan |
| 2020-03-27 | Added integration for using RData files with R/qtl, plus some other changes t... | zsloan |
