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2020-07-24Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. BonfaceKilz
2020-07-24Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` BonfaceKilz
2020-07-24Apply autopep-8...* wqflask/utility/formatting.py: apply it BonfaceKilz
2020-07-24Add zero to num_repr dictionary...* wqflask/utility/formatting.py(numify): Update `num_repr` to have a zero BonfaceKilz
2020-07-24Remove redundant variable...* wqflask/utility/corr_result_helpers.py(normalize_values_with_values): Remove `num_overlap` BonfaceKilz
2020-07-24Remove unused assert...* wqflask/utility/corr_result_helpers.py(normalize_values): At no one point will that assert be hit BonfaceKilz
2020-07-24Remove unused doc-tests...* wqflask/utility/corr_result_helpers.py: Delete doc-test BonfaceKilz
2020-07-24Simplify normalize_values...* wqflask/utility/corr_result_helpers.py(normalize_values): Replace loop with zip form BonfaceKilz
2020-07-24Remove unused doc-tests...* wqflask/utility/chunks.py: Remove test code from module BonfaceKilz
2020-07-24Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. BonfaceKilz
2020-07-24Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` BonfaceKilz
2020-07-22It should add new resources to Redis automatically nowzsloan
2020-07-16Expose elastic-search variables for tests to passBonfaceKilz
2020-07-08Removed remaining unused references to the old qtlreaperzsloan
2020-07-06Fixed some of the logic with how traits are authenticated to avoid situation ...zsloan
2020-06-24Temporary partial fix to issue of resources without info; need to add somethi...zsloan
2020-06-20Fixed ports for proxy (though I need to add the port to global variables) and...zsloan
2020-06-20Added some admin functionality and fixed issue with temp traitszsloan
2020-06-17A user's id is now set as a parameter if it doesn't already existauthentication_testzsloan
2020-06-17Adding all the authentication stuffzsloan
2020-06-05Commiting other current group/resource management code, plus the new fileszsloan
2020-06-04Really should have split this into many more commits:...- Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code zsloan
2020-05-28Added lines calling proxy for publish datasets + added some resource redis qu...zsloan
2020-05-12Merging Danny's changes and Bonface's changes to js importszsloan
2020-05-12Added change for F2s in r/qtl and fixed minor issue in save_user in redis_toolszsloan
2020-05-07Committing current progress on group manager + a minor fix in dataset.pyzsloan
2020-05-06Commiting a few minor changes plus returning rqtl_mapping.py to the same as o...zsloan
2020-05-06Replace CSS dependencies for datatablesBonfaceKilz
2020-04-26Merge master and testingmasterPjotr Prins
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-22Fixed a variety of issues related to users registering and logging in...GN2 should now work when Redis is empty zsloan
2020-04-16Many changes, including:...- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection" zsloan
2020-04-03Added option to select cofactors from collection for R/qtl...Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa zsloan
2020-03-27Added integration for using RData files with R/qtl, plus some other changes t...zsloan
2020-03-10Fixed issue that caused some problems when verifying hmaczsloan
2020-03-09I think this should complete consolidating all the collections code.zsloan
2020-03-03Missed one more reference in helper_functionszsloan
2020-03-03was missing a couple files in last commitzsloan
2020-03-03Refactored all the anonymous (not logged-in) user stuff so that both logged-i...zsloan
2020-02-12Fixed issue that broke some logins with the new redis user codezsloan
2020-01-23Forgot to commit new file containing Redis functionszsloan
2019-10-18Fixed issue with collections orderingzsloan
2019-10-08Fixed serious issue that caused output to be wrong for new reaper mapping...Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart zsloan
2019-09-24Fixed issue that caused GEMMA to not work with genotype files without cM, tho...zsloan
2019-09-06Fix name of javascript-twitter-post-fetcherPjotr Prins
2019-07-23Added change to automatically update datasets list using rest api instead of ......Removed option to edit certain html pages, like news, policies, etc zsloan
2019-06-07Global search and correlation results can handle null expression nowzsloan
2019-06-05Fixed issue that caused interval mapping to not work because the python imple......Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) zsloan
2019-05-24Replaced qtlreaper Dataset object with python objectzsloan
2019-05-06Removed some unused imports of htmlgen...Fixed a bug that sometimes occurred in search results Changed order of items on index page zsloan
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