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2016-09-25tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2Pjotr Prins
2016-09-10Support for running maintenance scripts so they can pick up all webserver ↵Pjotr Prins
settings Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py
2016-08-16Users can now select specific traits from collection when using collection ↵zsloan
tools (correlation matrix, wgcna, etc) To do the above, changed the way form submission worked for those features; previously each feature had its own form, but that was dumb so instead I wrote a javascript function that just changed a single form's target url Duplicate traits can no longer by added to collections Fixed the digits for a few table columns in collection (additive effect, etc).
2016-06-26gn_server: introduced one new query to fetch a dataset record and force ↵Pjotr Prins
fetch1 to return a tuple
2016-06-24Log: and document SQL callsPjotr Prins
2016-06-23Log: SQL queriesPjotr Prins
2016-06-23Logger: improved loggingPjotr Prins
2016-06-23Logger: prettifyPjotr Prins
2016-06-23Settings: add GN_SERVER_URLPjotr Prins
2016-06-23Add warnings for adding MySQLdb cursorPjotr Prins
2016-06-21log: replace print statementsPjotr Prins
2016-06-21logger: add format field (reserve)Pjotr Prins
2016-06-21Use logger also for benchmarkingPjotr Prins
2016-06-21Logger: switch for logging SQLALCHEMYPjotr Prins
2016-06-21Benchmarking: allow output select with LOG_BENCHPjotr Prins
2016-06-21Logger: SQLPjotr Prins
2016-06-19gn_server: Species info can be fetched from gn_serverPjotr Prins
2016-06-19gn_server: SQL handlingPjotr Prins
2016-06-19Logger: started logging SQLPjotr Prins
2016-06-19logger: adding functionality for SQLPjotr Prins
views.py: simplified code
2016-06-19Renamed settings so they are grouped togetherPjotr Prins
2016-06-18Logger: changed levelPjotr Prins
2016-06-18Logger: create stub so we can have multiple arguments to log functionsPjotr Prins
2016-06-18Logging settingsPjotr Prins
2016-06-18Documented loggerPjotr Prins
2016-06-18Logger: more infoPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-18Logging: behavioursPjotr Prins
2016-06-18Logger: improving outputPjotr Prins
2016-06-18Changed file permssions to non-executablePjotr Prins
2016-06-18Disable setting sys.pathsPjotr Prins
2016-06-18Logger: introducing loggingPjotr Prins
2016-06-17ConflictPjotr Prins
2016-06-17Removed trailing spaces in .py and .js filesPjotr Prins
2016-06-16Introduce behaviour parameters to facilitate developmentPjotr Prins
2016-05-17Merge branch 'staging' of github.com:genenetwork/genenetwork2zsloan
2016-05-10Correlation successfully uses materialized views and parallel processing, ↵zsloan
but for some reason is taking an immense amount of time so need to troubleshoot that Changed order of mapping options to display Interval Mapping first Changed some links to no longer open in new tab/window
2016-04-20A few fixes to get the webserver running againPjotr Prins
2016-04-20Parsing the names of the individuals, and coding H as -999DannyArends
2016-04-20Adding the geno file parser from ZachDannyArends
2016-04-20Show error when GENODIR is missingPjotr Prins
2016-04-20external program should fail on return value not zeropjotrp
2016-04-20Minor fixespjotrp
2016-04-20[PATCH 042/100] Sanitizing locationsPjotr Prins
2016-04-20[PATCH 041/100] Fixes for running toolsPjotr Prins
2016-04-20-aPjotr Prins
[PATCH 038/100] Fix compile errors
2016-04-20[PATCH 037/100] WebQtlConfig: sanitizing naming and used varsPjotr Prins
2016-04-20Settled on the _COMMAND syntax over _RUNpjotrp
2016-04-20[PATCH 033/100] Refactored file searchingPjotr Prins
2016-04-20Fine tuning file locatingpjotrp