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2018-04-09Fixed issue that caused and error for certain types of mapping due to variabl...zsloan
2018-04-09Removed unused code from convert_geno_to_bimbam.py and corestats.pyzsloan
2018-04-09Removed the basicStatistics directory/contents because nothing there was bein...zsloan
2018-04-06See #308.Pjotr Prins
2018-04-04ES: docPjotr Prins
2018-03-29Type checking in its own filePjotr Prins
2018-03-26Skip automatic use of EXPLAIN_TEMPLATE_LOADING.Pjotr Prins
2018-03-26Refactor startup config for gunicorn and werkzeugPjotr Prins
2018-03-26FixPjotr Prins
2018-03-26Authentication: some mods around defaultsPjotr Prins
2018-03-26- Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj...Pjotr Prins
2018-03-26Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT...Pjotr Prins
2018-03-26Update module to make it more testableMuriithi Frederick Muriuki
2018-03-26Check elasticsearch at point of useMuriithi Frederick Muriuki
2018-03-26Add check for elasticsearchMuriithi Frederick Muriuki
2018-03-26Refactor common items to more generic methods.Muriithi Frederick Muriuki
2018-03-26Add SMTP configuration variablesMuriithi Frederick Muriuki
2018-03-26Fail safely if elasticsearch is down or unconfiguredMuriithi Frederick Muriuki
2018-03-26Set to None if no value providedMuriithi Frederick Muriuki
2018-03-26Update configurationsMuriithi Frederick Muriuki
2018-03-26Delay after save for indexingMuriithi Frederick Muriuki
2018-03-26Add more configuration variables.Muriithi Frederick Muriuki
2018-03-26Add save_user() functionMuriithi Frederick Muriuki
2018-03-26Add elasticsearch_tools moduleMuriithi Frederick Muriuki
2018-03-26Add client_id and client_secret configurationsMuriithi Frederick Muriuki
2018-03-26Add configuration variables for external servicesMuriithi Frederick Muriuki
2018-02-10Fixed finding PATHs - one return statement!Pjotr Prins
2018-02-10Check for bimbam path and bail out if it is missingPjotr Prins
2017-12-20tools: find path for JS and gemma_wrapperPjotr Prins
2017-12-20Bring in some earlier work - mostly documentation and startup handlingPjotr Prins
2017-09-04gemma-wrapper: find binary in profilePjotr Prins
2017-06-12Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMANDPjotr Prins
2017-06-02settings: do not enforce JS pathsPjotr Prins
2017-05-31JS_GUIX_PATH may not be therePjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-21Merge from the diet branch.Pjotr Prins
2017-02-06Fixed appearance of several tables (search, mapping results, sample data)zsloan
2017-01-26GEMMA now works with CFW data (had to update where it looks for the input fil...zsloan
2016-10-11Merge branch 'pjotr-gn2' into testingPjotr Prins
2016-10-09Add version informationPjotr Prins
2016-10-07Make sure JS path existsPjotr Prins
2016-10-07Changed error outputPjotr Prins
2016-10-07Saner handling of TMPDIR and TEMPDIRPjotr Prins
2016-10-06Logger: add more granular debug messagesPjotr Prins
2016-10-05print statements should be loggerPjotr Prins
2016-10-03Config: supporting JSON OVERRIDESPjotr Prins
2016-10-03Debug: sanitize some outputPjotr Prins
2016-10-02Errors: added time stamps in UTCPjotr Prins
2016-09-25Make sure MAPPING_PATH existsPjotr Prins
2016-09-25tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2Pjotr Prins
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