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2015-06-18removed unused functionArtem Tarasov
2015-05-12Add info to warningpjotrp
2015-05-12More elaborate handling of finding pylmmPjotr Prins
2015-05-12Move path search into tools.pypjotrp
2015-05-11Moving pylmm out of the treepjotrp
2014-08-12Fixed the scrollable data tables for the show trait page...Added the option to display the rqtl results (and soon other mapping results) as either a manhattan plot or "interval map" style curve chart Removed a couple unnecessary javascript imports Changed the function in helper_functions.py that creates the trait and dataset objects, making it to where the trait object also gets qtl info Fixed color by trait after it was broken by the "scatterplot matrix" function Zachary Sloan
2014-07-18Added outlier highlighting...Changed order of tabs in statistics panel on trait page Started working on heatmap Zachary Sloan
2014-05-05Committing a bunch of changes related to integrating GEMMA and...adding the correlation matrix page Zachary Sloan
2014-02-27Began working on a TraitCollection.py file that will contain both the...object for logged in user collections and collections created by anonymous users. Zachary Sloan
2013-10-17Sample objects are now passed to js_data for drawing the correlation...scatter plot Lei Yan
2013-10-11Merge /home/sam/geneLei Yan
2013-10-07Worked on logins, session_ids, flash messages, etc.Sam
2013-09-13Merge https://github.com/zsloan/genenetwork...Resolved conflicts: wqflask/base/trait.py wqflask/wqflask/correlation/correlationFunction.py wqflask/wqflask/correlation/correlation_function.py wqflask/wqflask/correlation/correlation_functions.py wqflask/wqflask/correlation/show_corr_results.py Lei Yan
2013-07-19Finished integrating code that reads sample list from geno files...withouot using reaper and caches results so it doesn't need to read the file every single time someone loads a page Zachary Sloan
2013-07-12Rewrote code related to getting the tissue correlation column to display...Created new files for mrna assay tissue data and commonly used db query related functions Lei Yan
2013-06-20Added file corr_result_helpers.py that includes the function that...normalizes the lists of sample values Zachary Sloan
2013-06-19Merge branch 'flask' of git://github.com/leiyan/GeneNetwork2-Python into flask...Conflicts: wqflask/base/data_set.py wqflask/wqflask/views.py Fixed a couple conflicts to merge Lei's code related to the correlation page Zachary Sloan
2013-06-13Fixed issue where too much memory was used as a result of creating a...dataset object for each trait in the correlation results Added new fields/columns for each trait in the correlation result table (max LRS, max LRS location, mean expression) Fixed error if trait doesn't have these fields Lei Yan
2013-05-23Lots of changes around usersSam
2013-04-23Created file correlation_plot.py for the correlation scatterplot...Reverted temp_data.py to previous version that doesn't include the "part" input (for chunks) Made change to lmm related to splitting main iterator into chunks Deleted a bunch of unnecessary commented out code from show_trait.py Zachary Sloan
2013-04-18The plink_input is split into chunks that are stored in temp_data, but...we might decide to store it differently Zachary Sloan
2013-04-17Created file with pickled SNPIterator (from input.py) data...for HLC datasets Still need to read in file Zachary Sloan
2013-04-05Loading bar now correctly shows the time to completion...and the code seems to run correctly Zachary Sloan
2013-03-12Got cashing working with pickleZachary Sloan
2013-03-07Have first 45% of progress bar working...Changed "threaded" to True in runserver.py; this fixed issue related to getting progress bar to work Zachary Sloan
2013-03-07Created file temp_data to store data related to progress...of the marker regression calculations Storing progress of kinship matrix calculation in variable as portion of 45 (the rough percent of total marker regression calculation time Zachary Sloan
2013-02-28Updated benchmark.py to aggregate run times when you run the...operation(s) multiple times Zachary Sloan
2013-02-28Added benchmark.py that compares the time of various operations...and gives a report with the percent of total computation time each takes Zachary Sloan
2013-02-19Made lines for manhattan plot proportional to chromosome lengthsZachary Sloan
2013-01-31Changed reference to 'dataset_name' in keywords to 'dataset' to get...page to work, but will change all references to the dataset name to 'dataset_name' in future to avoid confusion between the dataset name and the actual dataset object Zachary Sloan
2013-01-22Pushed through a few errors in getting the correlation page runningZachary Sloan
2013-01-18Renamed CorrelationPage.py to show_corr_results.py...Worked with correlation code; got to the code that begins to do the actual correlations Created a function "get_dataset_and_trait" in the new file "helper_functions.py" because the code initializing the dataset and trait objects was repeated in multiple places Zachary Sloan
2012-09-27Worked on getting attributes in the SampleList object to display data properl...Zachary Sloan
2012-09-26Worked on implementing the extra attributes feature on the trait data pageZachary Sloan
2012-08-29Fixed so that outliers are now correctly highlightedZachary Sloan
2012-08-28Various changes related to the webqtlCaseData object and the way values/varia...Zachary Sloan
2012-06-22Working my way through getting the review and edit data dynamically generated...Sam Ockman
2012-06-05Ran reindent.py recursively on wqflask directorySam Ockman
2012-06-02Coming along in trying to get trait page workingSam Ockman
2012-05-24Trying to get stuff working under new structureSam Ockman