| Age | Commit message (Collapse) | Author | |
|---|---|---|---|
| 2020-07-24 | Revert "Add work-around for failed imports in unittest" | BonfaceKilz | |
| This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. | |||
| 2020-07-24 | Add work-around for failed imports in unittest | BonfaceKilz | |
| * wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` | |||
| 2020-07-24 | Apply autopep-8 | BonfaceKilz | |
| * wqflask/utility/formatting.py: apply it | |||
| 2020-07-24 | Add zero to num_repr dictionary | BonfaceKilz | |
| * wqflask/utility/formatting.py(numify): Update `num_repr` to have a zero | |||
| 2020-07-24 | Remove redundant variable | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values_with_values): Remove `num_overlap` | |||
| 2020-07-24 | Remove unused assert | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values): At no one point will that assert be hit | |||
| 2020-07-24 | Remove unused doc-tests | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py: Delete doc-test | |||
| 2020-07-24 | Simplify normalize_values | BonfaceKilz | |
| * wqflask/utility/corr_result_helpers.py(normalize_values): Replace loop with zip form | |||
| 2020-07-24 | Remove unused doc-tests | BonfaceKilz | |
| * wqflask/utility/chunks.py: Remove test code from module | |||
| 2020-07-24 | Revert "Add work-around for failed imports in unittest" | BonfaceKilz | |
| This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. | |||
| 2020-07-24 | Add work-around for failed imports in unittest | BonfaceKilz | |
| * wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` | |||
| 2020-07-16 | Expose elastic-search variables for tests to pass | BonfaceKilz | |
| 2020-07-08 | Removed remaining unused references to the old qtlreaper | zsloan | |
| 2020-07-06 | Fixed some of the logic with how traits are authenticated to avoid situation ↵ | zsloan | |
| where a trait is authenticated twice | |||
| 2020-06-24 | Temporary partial fix to issue of resources without info; need to add ↵ | zsloan | |
| something that automatically inserts resources with default privileges | |||
| 2020-06-20 | Fixed ports for proxy (though I need to add the port to global variables) ↵ | zsloan | |
| and also simplified the check_owner_or_admin function a little | |||
| 2020-06-20 | Added some admin functionality and fixed issue with temp traits | zsloan | |
| 2020-06-17 | A user's id is now set as a parameter if it doesn't already existauthentication_test | zsloan | |
| 2020-06-17 | Adding all the authentication stuff | zsloan | |
| 2020-06-05 | Commiting other current group/resource management code, plus the new files | zsloan | |
| 2020-06-04 | Really should have split this into many more commits: | zsloan | |
| - Now use proxy to pull trait data and hide traits/results that the user doesn't have view permission for - Created a factory method for creating trait ob so it can return None when user doesn't have view permissions (this is why such a large number of files are changed) - Added metadata to permutation export - Added current group management code - Added fixed password verification e-mail code | |||
| 2020-05-28 | Added lines calling proxy for publish datasets + added some resource redis ↵ | zsloan | |
| queries and a missing import for the hmac functions | |||
| 2020-05-12 | Merging Danny's changes and Bonface's changes to js imports | zsloan | |
| 2020-05-12 | Added change for F2s in r/qtl and fixed minor issue in save_user in redis_tools | zsloan | |
| 2020-05-07 | Committing current progress on group manager + a minor fix in dataset.py | zsloan | |
| 2020-05-06 | Commiting a few minor changes plus returning rqtl_mapping.py to the same as ↵ | zsloan | |
| on testing branch before merging Danny's changes and testing them | |||
| 2020-05-06 | Replace CSS dependencies for datatables | BonfaceKilz | |
| 2020-04-26 | Merge master and testingmaster | Pjotr Prins | |
| 2020-04-24 | Replaced hard-coded instances of GN2 urls with ones pulled from settings file | zsloan | |
| 2020-04-22 | Fixed a variety of issues related to users registering and logging in | zsloan | |
| GN2 should now work when Redis is empty | |||
| 2020-04-16 | Many changes, including: | zsloan | |
| - Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection" | |||
| 2020-04-03 | Added option to select cofactors from collection for R/qtl | zsloan | |
| Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa | |||
| 2020-03-27 | Added integration for using RData files with R/qtl, plus some other changes ↵ | zsloan | |
| to how it decides which mapping methods to display on the trait page | |||
| 2020-03-10 | Fixed issue that caused some problems when verifying hmac | zsloan | |
| 2020-03-09 | I think this should complete consolidating all the collections code. | zsloan | |
| 2020-03-03 | Missed one more reference in helper_functions | zsloan | |
| 2020-03-03 | was missing a couple files in last commit | zsloan | |
| 2020-03-03 | Refactored all the anonymous (not logged-in) user stuff so that both ↵ | zsloan | |
| logged-in and anonymous users share the same code | |||
| 2020-02-12 | Fixed issue that broke some logins with the new redis user code | zsloan | |
| 2020-01-23 | Forgot to commit new file containing Redis functions | zsloan | |
| 2019-10-18 | Fixed issue with collections ordering | zsloan | |
| 2019-10-08 | Fixed serious issue that caused output to be wrong for new reaper mapping | zsloan | |
| Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart | |||
| 2019-09-24 | Fixed issue that caused GEMMA to not work with genotype files without cM, ↵ | zsloan | |
| though this issue still needs to be dealt with to get the new qtlreaper working | |||
| 2019-09-06 | Fix name of javascript-twitter-post-fetcher | Pjotr Prins | |
| 2019-07-23 | Added change to automatically update datasets list using rest api instead of ↵ | zsloan | |
| json file Removed option to edit certain html pages, like news, policies, etc | |||
| 2019-06-07 | Global search and correlation results can handle null expression now | zsloan | |
| 2019-06-05 | Fixed issue that caused interval mapping to not work because the python ↵ | zsloan | |
| implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed) | |||
| 2019-05-24 | Replaced qtlreaper Dataset object with python object | zsloan | |
| 2019-05-06 | Removed some unused imports of htmlgen | zsloan | |
| Fixed a bug that sometimes occurred in search results Changed order of items on index page | |||
| 2019-03-18 | - Added PCA traits to correlation matrix. You can't change their names yet ↵ | zsloan | |
| or add them to a collection from the corr matrix page, but you can click them and access them from the trait page. I'll add the option to access them from the corr matrix page as well, but adding the option to change their names might be trickier since they're currently used as their Redis keys. I need some better way of passing the Redis key around so it can be stored in collections, but this is tricky without changing the structure in ElasticSearch - Fixed the way temp traits work so you can use them with various functions, like mapping, correlations, network graph, etc - Fixed some appearance issue where the network graph options were too wide if a trait name was too long | |||
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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