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path: root/wqflask/utility/tools.py
AgeCommit message (Expand)Author
2021-10-28Remove all elasticsearch references in gn2BonfaceKilz
2021-10-22Fix line pulling GN3_LOCAL_URL from settingszsloan
2021-10-22Added proxy and local GN3 URLs in tools.py (which should be set in the settin...zsloan
2021-04-30autopep8: Fix E121,E122,E123,EI24,E125,E126,E127,E128,E129,E131,E133BonfaceKilz
2021-04-30autopep8: Fix E101, E11BonfaceKilz
2021-04-30autopep8: Fix E70 and E701BonfaceKilz
2021-04-30autopep8: Fix E501BonfaceKilz
2021-04-30autopep8: Fix E301,E302,E303,E304,E305,E306BonfaceKilz
2021-04-30autopep8: Fix E20-E27...Run: python -m autopep8 --in-place --recrusive ./ --select\ E20,E211,E22,E224,E224,E225,E226,E227,E228,E231,E241,\ E242,E251,E252,E26,E265,E266,E27 -p 3 BonfaceKilz
2020-12-18Added redirect_uri to the ORCID_AUTH_URL since it wasn't working due to missi...zsloan
2020-08-19Remove extra whitespace(or add it) from comma separated items...See: <https://docs.python.org/2/library/2to3.html#2to3fixer-urllib> BonfaceKilz
2020-08-19Fix dictionary iteration methods...Run `2to3-3.8 -f dict -w .` See: <https://docs.python.org/2/library/2to3.html#2to3fixer-dict> and <https://stackoverflow.com/questions/17695456/why-does-python-3-need-dict-items-to-be-wrapped-with-list> BonfaceKilz
2020-08-18Wrap print statements in parenthesesBonfaceKilz
2020-07-24Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. BonfaceKilz
2020-07-24Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` BonfaceKilz
2020-07-24Revert "Add work-around for failed imports in unittest"...This reverts commit d5e87fa6fe7546b46790f512d984a5501223082f. BonfaceKilz
2020-07-24Add work-around for failed imports in unittest...* wqflask/utility/tools.py: Unittests will use `from wqflask.wqflask import app` and the gn2 script will use `from wqflask import app` BonfaceKilz
2020-07-16Expose elastic-search variables for tests to passBonfaceKilz
2020-05-06Replace CSS dependencies for datatablesBonfaceKilz
2020-04-26Merge master and testingmasterPjotr Prins
2020-04-24Replaced hard-coded instances of GN2 urls with ones pulled from settings filezsloan
2020-04-22Fixed a variety of issues related to users registering and logging in...GN2 should now work when Redis is empty zsloan
2020-03-03Refactored all the anonymous (not logged-in) user stuff so that both logged-i...zsloan
2019-09-06Fix name of javascript-twitter-post-fetcherPjotr Prins
2019-07-23Added change to automatically update datasets list using rest api instead of ......Removed option to edit certain html pages, like news, policies, etc zsloan
2019-02-18Updated installation instructions and SERVER_PORT for single flask serverPjotr Prins
2019-02-13Removed pylmm references and related functionsPjotr Prins
2018-09-05ELASTICSEARCH settings and fix runserver.py to run without gunicornPjotr Prins
2018-04-06See #308....Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. Pjotr Prins
2018-03-26Refactor startup config for gunicorn and werkzeugPjotr Prins
2018-03-26FixPjotr Prins
2018-03-26Authentication: some mods around defaultsPjotr Prins
2018-03-26- Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS Pjotr Prins
2018-03-26Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build. Pjotr Prins
2018-03-26Add SMTP configuration variables...* Add configuration variables to enable the system connect to the configured SMTP server to send out emails. Muriithi Frederick Muriuki
2018-03-26Set to None if no value provided...* Add a method to set the configuration variables to None if the configuration values are not provided at startup or in the configuration files. The system already checks for these values, and if they are absent, it simply fails to display the OAuth service as available for use to login. Muriithi Frederick Muriuki
2018-03-26Update configurations...* Have the authorisation URLs build up from the client id and client secret values. Muriithi Frederick Muriuki
2018-03-26Add more configuration variables....* Add configurations for elasticsearch and github. Muriithi Frederick Muriuki
2018-03-26Add client_id and client_secret configurations...* Provide the OAuth2 client_id and client_secret values in configuration variables. Muriithi Frederick Muriuki
2018-03-26Add configuration variables for external services...* Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. Muriithi Frederick Muriuki
2018-02-10Fixed finding PATHs - one return statement!Pjotr Prins
2018-02-10Check for bimbam path and bail out if it is missingPjotr Prins
2017-12-20tools: find path for JS and gemma_wrapperPjotr Prins
2017-12-20Bring in some earlier work - mostly documentation and startup handlingPjotr Prins
2017-09-04gemma-wrapper: find binary in profilePjotr Prins
2017-06-12Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMANDPjotr Prins
2017-06-02settings: do not enforce JS pathsPjotr Prins
2017-05-31JS_GUIX_PATH may not be therePjotr Prins
2017-05-31JS module handlingPjotr Prins
2017-05-21Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile Pjotr Prins
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