| Age | Commit message (Expand) | Author |
|---|---|---|
| 2018-04-06 | See #308....Cytoscape and related is now loaded from Guix. Use the latest GN2_PROFILE. | Pjotr Prins |
| 2018-03-26 | Refactor startup config for gunicorn and werkzeug | Pjotr Prins |
| 2018-03-26 | Fix | Pjotr Prins |
| 2018-03-26 | Authentication: some mods around defaults | Pjotr Prins |
| 2018-03-26 | - Disabled PYTHONPATH injection - fix Guix instead, see https://github.com/pj......- Renamed WQFLASK_SETTINGS to GN2_SETTINGS | Pjotr Prins |
| 2018-03-26 | Fixing authentication stuff so it uses parameters properly. Also no PYTHONPAT......it is now in the Guix build. | Pjotr Prins |
| 2018-03-26 | Add SMTP configuration variables...* Add configuration variables to enable the system connect to the configured SMTP server to send out emails. | Muriithi Frederick Muriuki |
| 2018-03-26 | Set to None if no value provided...* Add a method to set the configuration variables to None if the configuration values are not provided at startup or in the configuration files. The system already checks for these values, and if they are absent, it simply fails to display the OAuth service as available for use to login. | Muriithi Frederick Muriuki |
| 2018-03-26 | Update configurations...* Have the authorisation URLs build up from the client id and client secret values. | Muriithi Frederick Muriuki |
| 2018-03-26 | Add more configuration variables....* Add configurations for elasticsearch and github. | Muriithi Frederick Muriuki |
| 2018-03-26 | Add client_id and client_secret configurations...* Provide the OAuth2 client_id and client_secret values in configuration variables. | Muriithi Frederick Muriuki |
| 2018-03-26 | Add configuration variables for external services...* Add configuration variables for GitHub and ORCID which will be used by the system to allow users to login. | Muriithi Frederick Muriuki |
| 2018-02-10 | Fixed finding PATHs - one return statement! | Pjotr Prins |
| 2018-02-10 | Check for bimbam path and bail out if it is missing | Pjotr Prins |
| 2017-12-20 | tools: find path for JS and gemma_wrapper | Pjotr Prins |
| 2017-12-20 | Bring in some earlier work - mostly documentation and startup handling | Pjotr Prins |
| 2017-09-04 | gemma-wrapper: find binary in profile | Pjotr Prins |
| 2017-06-12 | Fix binary paths for GEMMA_COMMAND, PYLMM_COMMAND and PLINK_COMMAND | Pjotr Prins |
| 2017-06-02 | settings: do not enforce JS paths | Pjotr Prins |
| 2017-05-31 | JS_GUIX_PATH may not be there | Pjotr Prins |
| 2017-05-31 | JS module handling | Pjotr Prins |
| 2017-05-21 | Merge from the diet branch.... * refactored ./bin/genenetwork2 and /etc/default_settings - better detection of Guix - removed unused parameters, such as GEMMA_RESULT_PATH and TEMP_TRAITS - removing some default settings, such as PYLMM_COMMAND - rename some settings, such as SQL_URI and LOG_SQL_ALCHEMY - added GUIX_JS_PATH for JS modules * Added documentation on installing binary GN2 * Updated Twitter board to latest version in Guix - it had broken * Updated many tools in the latest Guix profile | Pjotr Prins |
| 2017-02-06 | Fixed appearance of several tables (search, mapping results, sample data)...Temporarily removed second sample table for CFW traits Fixed location of global search bar to work with wider screens | zsloan |
| 2017-01-26 | GEMMA now works with CFW data (had to update where it looks for the input fil......Y-axis for GEMMA now says -log(p) Updated the style of the trait sample data table in the trait page Updated dataset_select_menu_orig.js to also build just the Species and Group drop-downs for the trait input page (as opposed to all 4 drop-downs) Updated dataset menu json file Added option to show and hide columns to regular search page using colVis Changed regular and global search result table styles/column widths Began work on user trait submission code (not working yet though) Began work on static loading page for mapping results | zsloan |
| 2016-10-11 | Merge branch 'pjotr-gn2' into testing | Pjotr Prins |
| 2016-10-09 | Add version information | Pjotr Prins |
| 2016-10-07 | Make sure JS path exists | Pjotr Prins |
| 2016-10-07 | Changed error output | Pjotr Prins |
| 2016-10-07 | Saner handling of TMPDIR and TEMPDIR...Throw error when TMPDIRs are not writable | Pjotr Prins |
| 2016-10-03 | Config: supporting JSON OVERRIDES | Pjotr Prins |
| 2016-10-03 | Debug: sanitize some output | Pjotr Prins |
| 2016-09-25 | Make sure MAPPING_PATH exists | Pjotr Prins |
| 2016-09-25 | tools: export GENENETWORK_FILES and move cache into TMPDIR/gn2 | Pjotr Prins |
| 2016-09-10 | Support for running maintenance scripts so they can pick up all webserver set......Run with ./bin/genenetwork2 ~/my_settings.py -c ./wqflask/maintenance/gen_select_dataset.py | Pjotr Prins |
| 2016-06-24 | Log: and document SQL calls | Pjotr Prins |
| 2016-06-23 | Logger: improved logging | Pjotr Prins |
| 2016-06-23 | Settings: add GN_SERVER_URL | Pjotr Prins |
| 2016-06-21 | logger: add format field (reserve) | Pjotr Prins |
| 2016-06-21 | Logger: switch for logging SQLALCHEMY | Pjotr Prins |
| 2016-06-21 | Benchmarking: allow output select with LOG_BENCH | Pjotr Prins |
| 2016-06-19 | gn_server: SQL handling | Pjotr Prins |
| 2016-06-19 | Renamed settings so they are grouped together | Pjotr Prins |
| 2016-06-18 | Logging settings | Pjotr Prins |
| 2016-06-18 | Logger: more info | Pjotr Prins |
| 2016-06-18 | Logger: introducing logging | Pjotr Prins |
| 2016-06-18 | Logging: behaviours | Pjotr Prins |
| 2016-06-18 | Logger: improving output | Pjotr Prins |
| 2016-06-18 | Logger: introducing logging | Pjotr Prins |
| 2016-06-17 | Conflict | Pjotr Prins |
| 2016-06-17 | Removed trailing spaces in .py and .js files | Pjotr Prins |
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index : genenetwork2 | |
| GeneNetwork (2nd generation) |
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