genenetwork2 - GeneNetwork (2nd generation)

Age	Commit message (Collapse)	Author
2020-04-16	Many changes, including:	zsloan
	- Added permutation strata option for R/qtl - Made a variety of aesthetic changes to collections-related pages - Made a variety of aesthetic changes to the multi-trait tool options on the search result and correlation pages - Made some functional changes to collections that prevent duplicate traits and ensure new traits are at the top - The "Default Collection" is now always at the bottom of the collection list and renamed to "Your Default Collection"
2020-04-03	Added option to select cofactors from collection for R/qtl	zsloan
	Fixed some issues with displaying the R/qtl results from the RData HET3-ITP dataa
2020-03-27	Added integration for using RData files with R/qtl, plus some other changes ↵	zsloan
	to how it decides which mapping methods to display on the trait page
2019-10-08	Fixed serious issue that caused output to be wrong for new reaper mapping	zsloan
	Haplotype analyst now works for GEMMA Increased margin a bit to fix minor issue with buttons getting cut off on certain Safari versions for bar chart
2019-09-24	Fixed issue that caused GEMMA to not work with genotype files without cM, ↵	zsloan
	though this issue still needs to be dealt with to get the new qtlreaper working
2019-06-05	Fixed issue that caused interval mapping to not work because the python ↵	zsloan
	implementation of the reaper Dataset object doesn't include the addinterval method (so for those situations I still use reaper) Fixed issue where the last chromosome wasn't displayed for mapping results (though still need to fix issue where points are drawn too far to the right when a specific range is viewed)
2019-05-24	Replaced qtlreaper Dataset object with python object	zsloan